BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02540.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487032 jgi|Araly1|487032|fgenesh2_kg.6__166__AT5G02540.1 1901 0.0
> Ahg487032 jgi|Araly1|487032|fgenesh2_kg.6__166__AT5G02540.1
Length=1205
Score = 1901 bits (1029), Expect = 0.0
Identities = 1150/1207 (95%), Gaps = 13/1207 (1%)
Strand=Plus/Plus
Query 69 AGGTCAATCTATTAAAAATGGGATTATATTCACTAATCACAGGAAGAAGAGGACCAAGTG 128
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AGGTTAATCTAATAAAAATGGGATTATATTCACTAATCACAGGAAGAAGAGGACCAAGTG 62
Query 129 GATTTGGTTCAGCTTCAACAGCTGAAGAGGTTACTCAAGGGATTGATGCAACTAATCTCA 188
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 63 GATTTGGTTCAGCTTCAACAGCTGAAGAGGTTACTCTAGGGATTGATGCAACTAATCTCA 122
Query 189 CTGCAATTATCACAGGAGGGACAGGAGGAATAGGGATGGAGACAGCGAGAGTGCTGTCGA 248
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 123 CTGCAATCATCACAGGAGGGACAGGAGGAATAGGTATGGAGACAGCGAGAGTGCTGTCGA 182
Query 249 AGAGAGGTGCTCATGTGGTGATCGGTGCCCGAAACATGGGAGCTGCAGAAAACGCCAAAA 308
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGAGAGGTGTTCATGTGGTGATCGGTGCCCGAAACATGGGAGCTGCAGAAAACGCCAAAA 242
Query 309 CAGAGATTCTCAGACAAAACGCAAACGCACGTGTCACTCTTCTTCAATTAGATCTCTCTT 368
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 243 CTGAGATTCTCAGACAAAACGCAAACGCACGTGTCACTCTTCTTCACTTAGATCTCTCTT 302
Query 369 CCATCAAATCCATCAAAGCCTTTGTTCGTGAATTTCATGCCCTCCATCTTCCTCTCAATC 428
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 CCTTCAAATCCATCAAAGCCTTTGCTCGTGAATTTCATGCCCTCCATCTTCCTCTCAATC 362
Query 429 TCCTCATAAACAATGCAGGAGTAATGTTCTGTCCATACCAACTCTCTGAAGATGGAATCG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TCCTCATAAACAATGCAGGAGTAATGTTCTGTCCATACCAACTCTCTGAAGATGGAATCG 422
Query 489 AATTGCAGTTTGCTACAAATCACATTGGTCACTTTCTGTTGACAAACTTGCTCTTGGACA 548
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 423 AATTGCAGTTTGCTACAAATCACATTGGTCATTTTCTGTTGACAAACTTGCTGTTGGACA 482
Query 549 CAATGAAGAACACAGCTAAAACCAGTGGTGTTGAAGGAAGAATTTTGAATGTATCATCTG 608
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 483 CAATGAAGAACACAGCTAAAAGCAGTGGTGTTGAAGGAAGGATTTTGAATGTATCATCTG 542
Query 609 TAGCTCATATCTATACTTACCAAGAAGGAATCCAATTCGACAGCATCAATGACATTTGCA 668
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGGCTCATATCTATACTTACCAAGAAGGAATCCAATTCGACAGCATCAATGACATTTGCA 602
Query 669 GTTACTCGGATAAGCGAGCTTACGGACAATCGAAACTAGCCAATATATTGCATGCTAATG 728
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 603 GTTACTCGGATAAACGAGCTTACGGACAATCCAAACTAGCCAATATATTGCATGCTAACG 662
Query 729 AGCTCTCCCGTCAGCTTCAGGAAGAAGGAGTAAACATAACAGCAAATTCAGTTCACCCTG 788
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 663 AGCTCTCCCGTCAACTTCAGGAAGAGGGAGTAAACATAACAGCAAATTCAGTTCACCCTG 722
Query 789 GTCTTATTCTCACCAATCTCTTCCAACACACTGCTCTTTTAATGAGGTTCCTGAAGTTCT 848
|||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 723 GTCTCATCCTCACTAATCTCTTCCAACACACTGCTCTTTTAATGAGGTTCTTGAAGTTAT 782
Query 849 TCAGCTTCTACTTGTGGAAAAATATACCTCAGGGAGCAGCAACAACATGTTATGTTGCTC 908
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 783 TCAGCTTCTACTTATGGAAAAATATACCTCAGGGAGCAGCTACAACATGTTATGTTGCTC 842
Query 909 TGCATCCAAGTGTGAAGGGAGTAACAGGAAAGTACTTTGCTGATTGCAACGAAGTCACTC 968
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGCATCCAAGTGTGAAGGGCGTAACAGGAAAGTACTTTGCTGATTGCAACGAAGTCACTC 902
Query 969 CAAGCAAACTTGCTAGAGATGAGACTTTGGCACAGAAACTCTGGGATTTCAGTGTTAAGC 1028
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 903 CAAGCAAACTTGCTAGAGATGAGACTTTGGCGCAGAAACCCTGGGATTTCAGTGTTAAGC 962
Query 1029 TCATTAACTCGGTTTCTAAAAAGAACTACCTCGGTTTCGATGACACCACTTGAATCTCTA 1088
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 963 TCATTAACTCGGTTTCTAAAAAGAACTACCTCGGTTTCGGTGACACCACTTAAATCTCTA 1022
Query 1089 CGGTGTTCTTGTTGAATGTTACCTA---AAGAGTGaaaa-aaaaGTAA-GA-ACAAG--- 1139
|||||| |||||| ||||||||| ||||||||||| |||||||| | | |||
Sbjct 1023 AGGTGTTGTTGTTGTTTGTTACCTACCTAAGAGTGAAAACAAAAGTAATGTCAGAAGAAA 1082
Query 1140 TAGAGATTGTGATGTTTCTTTCCACATTATCGTATGGTAACTCATGAGATGCATTGTTGT 1199
|||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| |
Sbjct 1083 TAGAGAGTGTGATGTTTCTTTCCACCTTATCATATGGTAACT-A-GAG--GCATTGTTAT 1138
Query 1200 ATGCTTAAATATTTTATCGAGTGAATATGTAACCGCGTCAATCTTTTCATAGTATGGACA 1259
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1139 ATGCTTAAATATTTTATCGAGTGAATATGTAACCGCGTCAATCATTTCATAGTATGGACA 1198
Query 1260 ATAAAAA 1266
||| |||
Sbjct 1199 ATACAAA 1205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5