BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02550.1

Length=505
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487033 jgi|Araly1|487033|fgenesh2_kg.6__167__AT5G02550.1          547    2e-155


> Ahg487033 jgi|Araly1|487033|fgenesh2_kg.6__167__AT5G02550.1
Length=449

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 428/484 (88%), Gaps = 40/484 (8%)
 Strand=Plus/Plus

Query  8    CACACAACAAtctctctcttcttatctctcttttctctcttCCCAATCCTTGTTGTCTGA  67
            ||||||||||||||||| ||||||  ||||   ||| | |||||||||||| ||||||||
Sbjct  1    CACACAACAATCTCTCTATTCTTA--TCTC---TCT-T-TTCCCAATCCTTTTTGTCTGA  53

Query  68   ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  54   ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG  113

Query  128  TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCTTCCA  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  114  TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCCTCCT  173

Query  188  CCGTTCCTACTAACCCGCCACGTCACCAGATCCCTCCGCCGTCTCCTGCAGCTCCTCCGG  247
            ||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||||
Sbjct  174  CCGTTCCTACTAACCCGCCGCGCCACCAGATCCCTCTGCCGTCTCCGGCAGCTCCTCCGG  233

Query  248  CTAA-CCGTAGCAACAATGACGACAATGTTAGCAAAGATCACCATGGGAACGCCTCTTCT  306
             ||| |||||||||||||||||||||||||||||| |||||| | |||||||||||||||
Sbjct  234  -TAAACCGTAGCAACAATGACGACAATGTTAGCAAGGATCACAAAGGGAACGCCTCTTCT  292

Query  307  AATTAATATCGCttttttttGTCTTTGGTTTTAATATAAGTTTCAGCCTTTTAATTATCG  366
            ||||||| |   |||                 ||||||||||||||||||||||||||||
Sbjct  293  AATTAAT-T---TTT-----------------AATATAAGTTTCAGCCTTTTAATTATCG  331

Query  367  CATAAGCCTTTCTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTATTGTATGATAA  426
            |||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct  332  CATAAGCCT--CTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTCGTGTATGATAA  389

Query  427  TCCCATGAATCAATCGTAGTTTCGTATTTCGGGTTTATGGTG--G--TATTGAATGATGA  482
                |||||||||||||| ||||||||||||||||||||||   |  |||||||||| ||
Sbjct  390  ----ATGAATCAATCGTAATTTCGTATTTCGGGTTTATGGTATTGACTATTGAATGAAGA  445

Query  483  ATAA  486
            ||||
Sbjct  446  ATAA  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18352838309


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5