BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02550.1 Length=505 Score E Sequences producing significant alignments: (Bits) Value Ahg487033 jgi|Araly1|487033|fgenesh2_kg.6__167__AT5G02550.1 547 2e-155 > Ahg487033 jgi|Araly1|487033|fgenesh2_kg.6__167__AT5G02550.1 Length=449 Score = 547 bits (296), Expect = 2e-155 Identities = 428/484 (88%), Gaps = 40/484 (8%) Strand=Plus/Plus Query 8 CACACAACAAtctctctcttcttatctctcttttctctcttCCCAATCCTTGTTGTCTGA 67 ||||||||||||||||| |||||| |||| ||| | |||||||||||| |||||||| Sbjct 1 CACACAACAATCTCTCTATTCTTA--TCTC---TCT-T-TTCCCAATCCTTTTTGTCTGA 53 Query 68 ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 54 ATCTGTAGCTAACCATGTCGGAGAGACCAAGCCGTCACCAGAGAAGACCTTCTCAGAGCG 113 Query 128 TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCTTCCA 187 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 114 TTTTTCCGATCTCCCTTGACGATCTCTCCGATATCTCTCTCGCAGCAAATCCTCCCTCCT 173 Query 188 CCGTTCCTACTAACCCGCCACGTCACCAGATCCCTCCGCCGTCTCCTGCAGCTCCTCCGG 247 ||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||| Sbjct 174 CCGTTCCTACTAACCCGCCGCGCCACCAGATCCCTCTGCCGTCTCCGGCAGCTCCTCCGG 233 Query 248 CTAA-CCGTAGCAACAATGACGACAATGTTAGCAAAGATCACCATGGGAACGCCTCTTCT 306 ||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||| Sbjct 234 -TAAACCGTAGCAACAATGACGACAATGTTAGCAAGGATCACAAAGGGAACGCCTCTTCT 292 Query 307 AATTAATATCGCttttttttGTCTTTGGTTTTAATATAAGTTTCAGCCTTTTAATTATCG 366 ||||||| | ||| |||||||||||||||||||||||||||| Sbjct 293 AATTAAT-T---TTT-----------------AATATAAGTTTCAGCCTTTTAATTATCG 331 Query 367 CATAAGCCTTTCTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTATTGTATGATAA 426 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 332 CATAAGCCT--CTTTTCTCTTAATAATCAGATTTTGTCTTTCTTTACTCGTGTATGATAA 389 Query 427 TCCCATGAATCAATCGTAGTTTCGTATTTCGGGTTTATGGTG--G--TATTGAATGATGA 482 |||||||||||||| |||||||||||||||||||||| | |||||||||| || Sbjct 390 ----ATGAATCAATCGTAATTTCGTATTTCGGGTTTATGGTATTGACTATTGAATGAAGA 445 Query 483 ATAA 486 |||| Sbjct 446 ATAA 449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18352838309 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5