BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02560.2

Length=738
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg892166 jgi|Araly1|892166|Al_scaffold_0006_162                     124    7e-28
  Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1        62.1    6e-09


> Ahg892166 jgi|Araly1|892166|Al_scaffold_0006_162
Length=378

 Score =  124 bits (67),  Expect = 7e-28
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  56   ATGGATTCCGGAACCAAAGTGAAGAAAGGAGCCGCTGGAAGAAGAAGTGGTGGAGGTCCT  115
            |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct  1    ATGGATTCCGGAACCAAAGTGAAGAAAGGAGCCGCTAGAAGAAGAAGTGGTGGAGGTCAT  60

Query  116  AAGAAGAAACCGG  128
            |||||||||||||
Sbjct  61   AAGAAGAAACCGG  73


> Ahg492075 jgi|Araly1|492075|fgenesh2_kg.7__1508__AT4G27230.1
Length=601

 Score = 62.1 bits (33),  Expect = 6e-09
 Identities = 58/70 (83%), Gaps = 1/70 (1%)
 Strand=Plus/Plus

Query  207  AGCGTGTCGGAACCGGAGCTCCGGTCTATCTCGCCGCCGTCCTCGAGTATCTTGCTGCTG  266
            ||||||| ||  |||||||||||||||||||||||||||| || || || || || || |
Sbjct  180  AGCGTGTTGGTGCCGGAGCTCCGGTCTATCTCGCCGCCGTTCTTGAATACCTCGCCGCCG  239

Query  267  AGAATTCTTG  276
            ||  ||||||
Sbjct  240  AGG-TTCTTG  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27181639821


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5