BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02570.1
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939636 jgi|Araly1|939636|scaffold_600180.1 665 0.0
Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1 370 4e-102
Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266 283 6e-76
Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1 226 1e-58
Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1 222 1e-57
> Ahg939636 jgi|Araly1|939636|scaffold_600180.1
Length=439
Score = 665 bits (360), Expect = 0.0
Identities = 386/399 (97%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAaaggcggagaag 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGCACCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAAAGGCGGAGAAG 80
Query 61 aagatcgcgaaagaaggaggaacgagcgagattgtcaagaagaagaagaagacgaagaag 120
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 81 AAGATCGCGAAAGAAGGAGGAACGAGCGAGATTATTAAGAAGAAGAAGAAGACGAAGAAG 140
Query 121 agCACAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAACAGGTTCATCCAGATATT 180
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 141 AGCACGGAGACGTACAAGATCTACATCTTCAAGGTATTGAAACAGGTTCATCCAGATATC 200
Query 181 GGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATCAACGACATTTTCGAGAAA 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 201 GGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCATCAACGACATTTTTGAGAAA 260
Query 241 CTCGCTCAGGAATCGTCTCGTCTCGCTCGTTACAATAAGAAACCGACGATCACGTCTCGT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 261 CTCGCTCAGGAATCGTCTCGTCTCGCTCGTTACAATAAGAAACCGACCATCACGTCTCGT 320
Query 301 GAAATCCAAACCGCCGTGAGACTTGTTCTGCCTGGTGAATTGGCTAAGCATGCCGTCTCT 360
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 321 GAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAATTGGCTAAGCATGCTGTCTCT 380
Query 361 GAAGGAACCAAAGCTGTCACCAAATTCACAAGCTCTTAA 399
|||||||||||||| ||||||||||||||||||||||||
Sbjct 381 GAAGGAACCAAAGCCGTCACCAAATTCACAAGCTCTTAA 419
> Ahg478268 jgi|Araly1|478268|fgenesh2_kg.3__969__AT3G09480.1
Length=546
Score = 370 bits (200), Expect = 4e-102
Identities = 337/400 (84%), Gaps = 22/400 (6%)
Strand=Plus/Plus
Query 1 ATGGCGCCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAaaggcggagaag 60
||||| ||||||||||||||||||||||||||| ||| || ||||||||| ||||||
Sbjct 21 ATGGCACCGAAGGCAGAGAAGAAACCGGCGGAG-AAG---CA--ACCAAAGGCAGAGAAG 74
Query 61 aagatcgcgaaagaaggaggaacgagcgagattgtcaagaagaagaagaagacgaagaag 120
||||| ||||||||||||| | ||| || | || |||||||||||| ||||||
Sbjct 75 AAGATTACGAAAGAAGGAGG-A--AGC--GA--G---AG--GAAGAAGAAGACTAAGAAG 122
Query 121 agCACAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAACAGGTTCATCCAGATATT 180
|||||||||||||||||||||||| | |||||||| ||||||||||||||||| ||||||
Sbjct 123 AGCACAGAGACGTACAAGATCTACCTATTCAAGGTGTTGAAACAGGTTCATCCTGATATT 182
Query 181 GGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATCAACGACATTTTCGAGAAA 240
|| |||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 183 GGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGATACCTTCGAGAAA 242
Query 241 CTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAAACCGACGATCACGTCTCG 299
|||||||||||||||| | | ||| | || || ||||| |||||||||||||| ||
Sbjct 243 ATCGCTCAGGAATCGTCAAAAT-TGGCTAGGTATAACAAGAAGCCGACGATCACGTCCCG 301
Query 300 TGAAATCCAAACCGCCGTGAGACTTGT-TCTGCCTGGTGAATTGGCTAAGCATGCCGTCT 358
||||||||||||||||| || || || | ||||||||||||| | ||||| || || |
Sbjct 302 GGAAATCCAAACCGCCGTAAGGCTCGTGT-TGCCTGGTGAATTATCGAAGCACGCTGTTT 360
Query 359 CTGAAGGAACCAAAGCTGTCACCAAATTCACAAGCTCTTA 398
|||| || |||||||| ||||| |||||||| ||||||||
Sbjct 361 CTGAGGGTACCAAAGCCGTCACAAAATTCACCAGCTCTTA 400
> Ahg898300 jgi|Araly1|898300|Al_scaffold_0005_2266
Length=294
Score = 283 bits (153), Expect = 6e-76
Identities = 245/289 (85%), Gaps = 8/289 (3%)
Strand=Plus/Plus
Query 105 gaagaaga-cgaagaagagCA-CAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAA 162
|||||| | ||||||||| || | |||||||||||||||||||| |||||||| |||||
Sbjct 3 GAAGAA-ATCGAAGAAGAACATC-GAGACGTACAAGATCTACATCTTCAAGGTTTTGAAG 60
Query 163 CAGGTTCATCCAGATATTGGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATC 222
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CAAGTTCATCCAGATATCGGAATCTCTGGGAAAGCGATGGGAATCATGAACAGTTTCATC 120
Query 223 AACGACATTTTCGAGAAACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAA 281
|||||||| ||||||||||||||||||||||| || || | | ||| | ||||| |||||
Sbjct 121 AACGACATCTTCGAGAAACTCGCTCAGGAATCATCGCGAT-TGGCTAGGTACAACAAGAA 179
Query 282 ACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGT-TCTGCCTGGTGAAT 340
||||||||||| ||||| ||||| || || || ||||||||||| | ||||||| |||
Sbjct 180 GCCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGT-TGCCTGGAGAAC 238
Query 341 TGGCTAAGCATGCCGTCTCTGAAGGAACCAAAGCTGTCACCAAATTCAC 389
| | || || || || |||||||| || || || || || ||||||||
Sbjct 239 TCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACAAAATTCAC 287
> Ahg484977 jgi|Araly1|484977|fgenesh2_kg.5__969__AT3G45980.1
Length=673
Score = 226 bits (122), Expect = 1e-58
Identities = 248/308 (81%), Gaps = 12/308 (4%)
Strand=Plus/Plus
Query 96 caagaagaagaagaagacgaagaagag-CACAGAGACGTACAAGATCTACATTTTCAAGG 154
||| |||||||||| || ||||||||| | ||||| |||||||||||||| |||||||
Sbjct 223 CAAAAAGAAGAAGATGAAGAAGAAGAGTGTC-GAGACTTACAAGATCTACATCTTCAAGG 281
Query 155 TAT-TGAAACAGGTTCATCCAGATATTGGAATCTCTG-GTAAAGCGATGGGAATCATGAA 212
| | |||| || ||||||||||||||||| || || | | ||||| ||||||||||||||
Sbjct 282 T-TCTGAAGCAAGTTCATCCAGATATTGGTATTTC-GAGCAAAGCTATGGGAATCATGAA 339
Query 213 CAGTTTCATCAACGACATTTTCGAGAAACTCGC-TCAGGAATCGTCTC-GTCTCGCTCGT 270
||||||||||||||| || ||||||||| | || || ||||||||| | || || |
Sbjct 340 CAGTTTCATCAACGATATCTTCGAGAAATTGGCATC-GGAATCGTCGAAG-CTTGCGAGG 397
Query 271 TACAATAAGAAACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGTTCTG 330
|| |||||||| |||||||| || ||| | || || || || || || |||||||||||
Sbjct 398 TATAATAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACTGCTGTTAGACTTGTTCTT 457
Query 331 CCTGGTGAA-TTGGCTAAGCATGCCGTCTCTGAAGGAACCAAAGCTGTCACCAAATTCAC 389
|||||||| ||| | || || || || ||||| ||||| || || || |||||||||||
Sbjct 458 CCTGGTGAGCTTG-CGAAACACGCTGTTTCTGAGGGAACTAAGGCGGTGACCAAATTCAC 516
Query 390 AAGCTCTT 397
|||||||
Sbjct 517 CAGCTCTT 524
> Ahg489144 jgi|Araly1|489144|fgenesh2_kg.6__2278__AT5G22880.1
Length=526
Score = 222 bits (120), Expect = 1e-57
Identities = 226/276 (82%), Gaps = 12/276 (4%)
Strand=Plus/Plus
Query 96 caagaagaagaagaaga-cgaagaagagC-ACAGAGACGTACAAGATCTACATTTTCAAG 153
||||||||||||| ||| | ||||||| | | |||||||||||||||||||| ||||||
Sbjct 142 CAAGAAGAAGAAG-AGATCTAAGAAGAACGTC-GAGACGTACAAGATCTACATCTTCAAG 199
Query 154 GTATTGAAACAGGTTCATCCAGATATTGGAATCTCTGGTAAAGCGATGGGAATCATGAAC 213
|| |||||||| |||||||||||||| |||||||| | ||||| |||||||||||||||
Sbjct 200 GTGTTGAAACAAGTTCATCCAGATATCGGAATCTCAAGCAAAGCCATGGGAATCATGAAC 259
Query 214 AGTTTCATCAACGACAT-TTTCGAGAAACTCGCTCAG-GAATCGTCTC-GTCTCGCTCGT 270
|||||||||||||| || ||| |||||||| ||| | || || || | || || |
Sbjct 260 AGTTTCATCAACGATATCTTT-GAGAAACTTGCTG-GTGAGTCTTCGAAG-CTTGCGAGG 316
Query 271 TACAATAAGAAACCGACGATCACGTCTCGTGAAATCCAAACCGCCGTGAGACTTGT-TCT 329
||||| ||||| |||||||| || ||| | || || || || || ||||||||||| | |
Sbjct 317 TACAACAAGAAGCCGACGATTACTTCTAGGGAGATTCAGACGGCGGTGAGACTTGTGT-T 375
Query 330 GCCTGGTGAATTGGCTAAGCATGCCGTCTCTGAAGG 365
||||||||| ||||| || ||||| || ||||||||
Sbjct 376 GCCTGGTGAGTTGGCAAAACATGCTGTTTCTGAAGG 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14308345875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5