BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02580.1
Length=722
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487036 jgi|Araly1|487036|fgenesh2_kg.6__170__AT5G02580.1 761 0.0
> Ahg487036 jgi|Araly1|487036|fgenesh2_kg.6__170__AT5G02580.1
Length=560
Score = 761 bits (412), Expect = 0.0
Identities = 528/578 (91%), Gaps = 31/578 (5%)
Strand=Plus/Plus
Query 8 TGTAGCGTTTTATATATATTTTCACCTGCCTTTCTTCTCCCATCCATCATCATATCTCTC 67
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1 TGTAGCGTTTTATATATATTTTCACCTGCCTCTCTTCTCCCATCCATCATC--ATCTCTC 58
Query 68 TCTAATTTCTCTCCGTATAACACAAACTACTCTTTAATAAGTATT--TATGGGTGATCAT 125
|||||||||||| || | ||||||||||| | | || |||||||||||||
Sbjct 59 TCTAATTTCTCT-CG----------A-TACTCTTTAATCA-TTTTCATATGGGTGATCAT 105
Query 126 AATAGCTCGCAAGCTTCTTACATCCATTTGGTGCATCATTTGATAGAAGAATGTATAGTA 185
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 106 AATAGCTCACAAGCATCTTACATCCATTTGGTGCATCATTTGATAGAAGAATGTATAATA 165
Query 186 TTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATTAAGCCT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 166 TTCAACATGGGCAAAGAAGAGTGTATGGATGCTCTGTTCAAGCATGCTAATATCAAGCCC 225
Query 246 ATCATCACTTCCACAGTGTGGAAAGAGCTAGCGAAAGAGAACAAAGAGTTCTTCGAGGCA 305
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 226 ATCATCACTTCCACAGTGTGGAAGGAGCTAGAGAAAGAGAACAAAGAGTTCTTCGAGGCA 285
Query 306 TACGAGAGAAGACGAGAAGAAATACCGACCGAGAAAGAGACAGCTCGAAGAATCCGTGAT 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 286 TACGAGAGAAGACGAGAAGAAATACCGACCGAGAAAGAGACAGCTCGAAGAATCCGAGAT 345
Query 366 TTGCTTTCACGAACTACAATCTAAGATCATGACACCTACTTTTACTTACATATACATACA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TTGCTTTCACGAACTACAATCTAAGATCATGACACCTACTTTTACTTACATATACATACA 405
Query 426 CTCATCTATATTACCATAGGCATGTGTG--TGT--ATATGTATGATCCGACGATTCTATA 481
|||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 406 CTCATCTATATTACTATAGGCATGTGTGAGTGTGTATATGTATGATCCGA---TTCTATA 462
Query 482 TATACTCTTTA----GACAATTTGTATTATAATCTTCATTAGGAAATGAATAATTCACCT 537
|| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 463 TAGACTCTTTAATTAGACAATATGTATTATAACCTTCATTAGGAAATGAATAATTCACCT 522
Query 538 TTGGGGAAATCTCTT--TTT-CAGCTTAGTTTAAAATC 572
||| | |||||| || ||| ||||||| |||||||||
Sbjct 523 TTGAGAAAATCTTTTCGTTTTCAGCTTAATTTAAAATC 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26571673149
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5