BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02590.1
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487037 jgi|Araly1|487037|fgenesh2_kg.6__171__AT5G02590.1 1447 0.0
> Ahg487037 jgi|Araly1|487037|fgenesh2_kg.6__171__AT5G02590.1
Length=1012
Score = 1447 bits (783), Expect = 0.0
Identities = 941/1014 (93%), Gaps = 23/1014 (2%)
Strand=Plus/Plus
Query 1 ATCGCCGGCGTTAGGGTTGTTTTTCTCAACAATGGTGTCTCTGGCCAAGTTTCACTACTG 60
|||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||
Sbjct 1 ATCGCCGGCGTTAGGGTTTTTTTTCTCAACAATGGCGTCTCTTGCCAAGTTTCACTACTG 60
Query 61 TGATCAAACACTCCACCTCCGACTCGACACTCACCGTAAACCGCAGCCTAAACCTGTTTC 120
||| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 61 TGACCAAACACTTCACCTCCGACTCGATACTCACCGTAAACCCCAGCCTAAACCTGTTTC 120
Query 121 ATACCGAATCTTACATAAACCTCCTCCTTCTCGCGTCATCAGAGCTTCTTCG-------- 172
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||
Sbjct 121 ATACCGAATCTTACAAAAACCTCCTCCGTCTCGCGCCATCAGAGCTTCTTCGTCTTCATC 180
Query 173 -T--T--T--TCATCAAACCCTAAACCCTCTTTCCTCAAAACCACCTGCGTGACCTTAAC 225
| | | ||||||||||||||||| |||||| |||||||||||||||| ||| ||||
Sbjct 181 ATCATCATCATCATCAAACCCTAAACCATCTTTCTTCAAAACCACCTGCGTAACCCTAAC 240
Query 226 AACAGCCGCCGCTTTACTCTCCGCTTCCCTCCACCTCTCCACCAAACCCGTCACCGCAGC 285
|||||||||||||||| ||||||||||||| |||||| | |||||||||| |||||||||
Sbjct 241 AACAGCCGCCGCTTTATTCTCCGCTTCCCTTCACCTCGCTACCAAACCCGCCACCGCAGC 300
Query 286 AACTCTCGTCTCACCTCCTCCTCCACCATCCACGGCGGCGGATCTCACTTCCGATCAAAT 345
|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||
Sbjct 301 AACTCTCGTCTCACCTCCTCCTCCACCATCCACGACGGCGGATCTCAC-T--GATCAAAT 357
Query 346 CTCGTCGCGTCCAAAGGAAGAAGAAGAAGAAGCAGCGCTGGAGAAGCACCTCACTAAGAA 405
||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 358 CTCGTCGCGTCAAAAGGAAGAAGAAGAAGAAGCAGCGCTGGAGAAACATCTCACTAAGAA 417
Query 406 TCCAAACGACGTCGAAGCTCTTCAATCACTGATGAAAATCAAATTCCAAACCAAAAACAT 465
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |
Sbjct 418 TCCAAACGACGTCGAAGCTCTTCAGTCTCTAATGAAAATCAAATTCCAAACCAAAAACCT 477
Query 466 CGACCACGCCTTAGAGATTCTAAACCGTTTGATCGAAATCCAACCCGAAGAACAAGAATG 525
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 CGACCACGCGTTAGAGATTCTAAACCGTTTGATCGAAATCGAACCCGAAGAACAAGAATG 537
Query 526 GCGGATCCTAAAAGCTCAGGTACAAACCTACGGCGGCGATTTCGATTCAGCGACGAAAGG 585
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 538 GCGGATCTTAAAAGCTCAGGTACAAACTTACGGCGGCGATTTCGAATCAGCAACGAAAGG 597
Query 586 ATTCGAAGAGGTTCTATCTAAAGATCCATTTCGTGTAGAAGCTTATCACGGATTAGTAAT 645
|||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 598 ATTCGAAGAGATTCTAGCTAAAGATCCGTTTCGTGTCGAAGCTTATCACGGATTAGTAAT 657
Query 646 GGCTTACTCCGAATCCGAATCGAAA-TTATCAGAGATCGAGAGTAGAATCAACGAAGCGA 704
||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 658 GGCTTACTCTGAATCCGAATC-AAAGTTATCAGAGATCGAGAGTAGAATCAACGAAGCGA 716
Query 705 TTGAGAAATGCAAGAAGGAGAACAAGAA-A--GATTTTAGAGATTTCATGTTGTTGATTG 761
|||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 717 TTGAGAAATGCAAGAAGGAGAACAAGAAGAAAGATTTCAGAGATTTCATGTTGTTGATTG 776
Query 762 CTCAGATTAGGGTTATCAAAGGTAATCCAATTGAAGCACTTAGGGTTTATCAAGAGTTGG 821
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 CACAGATTAGGGTTATAAAAGGTAATCCAATTGAAGCACTTAGGGTTTATCAAGAATTGG 836
Query 822 TGAAAGATGAGCCTAAAGACTTTAGACCATATCTATGTCAAGGTTTGATTTATACATTGA 881
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 837 TGAAAGATGAGCCTAAAGATTTTAGGCCATACCTATGTCAAGGTTTGATTTATACATTGA 896
Query 882 TGAAGAAGAAAGATGAAGCAGAGAAGCAATTTGCAGAGTTTAGAAGATTGGTTCCTGAGA 941
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 TGAAGAAGAAAGATGAAGCAGAGAAGCAATTTGAAGAGTTTAGAAGATTGGTTCCTGAGA 956
Query 942 ATCATCCTTACAAAGAGTATTTAGATGCTAATGTACTCAATACTAACAAGCTTT 995
|||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct 957 ATCATCCTTATAAAGACTATTTTGATGCTAATGTCCTCAATACTAACAAGCTTT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40753398273
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5