BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02600.2
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939640 jgi|Araly1|939640|scaffold_600184.1 1533 0.0
Ahg939639 jgi|Araly1|939639|scaffold_600183.1 311 9e-84
> Ahg939640 jgi|Araly1|939640|scaffold_600184.1
Length=1000
Score = 1533 bits (830), Expect = 0.0
Identities = 921/966 (95%), Gaps = 2/966 (0%)
Strand=Plus/Plus
Query 43 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACAACCCTTTGCTCAACCATGGAT 102
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 12 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACGACCCTTTGCTCAACCATGGAC 71
Query 103 CAAACCTCACAACCTTCTTCTTCTTCTTCAGCCACGATCCGGCTCGGTGGTCGAGCCATT 162
||||||||||||||||| ||||| |||||| || | |||||||| ||||||||||||||
Sbjct 72 CAAACCTCACAACCTTCATCTTCCTCTTCATCCGCAATCCGGCTTGGTGGTCGAGCCATC 131
Query 163 GACCGTCATAACCCAATCATACGTGACGGTCGGAGACTCACTCCTCCACCTTCCCCAAAC 222
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 132 GATCGTCATAACCCAATCATACGTGACGGTCGGAGACTGACTCCTCCACCTTCTCCAAGC 191
Query 223 CTTAATCCCTCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGACTAGGT 282
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 192 CTTAATCCATCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGATTAGGT 251
Query 283 CTCGAGAGTAGTGAACAAAAACGGT-TAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 341
|| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 252 CTTGAGAGTAGTGAGCAAAAAC-GTGTAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 310
Query 342 TGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACACCTCAGGGTTCTTCAAGGTA 401
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 311 CGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACTCCTCAGGGTTCTTCAAGGTA 370
Query 402 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGACCCGATTCCAATACC 461
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 371 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGAACCGATTCCACTACC 430
Query 462 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTAAATAATTTTCATGAAGATCGACT 521
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||
Sbjct 431 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTGGATAATCTTCATGAAGAGCAACT 490
Query 522 CATAATAAACGCCTCAAAGTATCTATCAACTTCTGCTTCTTTCTTGGAGAAGAAGCAACC 581
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 491 GATTATAAACGCCTCAAAGTATCTATCAACTTCTGCGTCTTTCTTGGAGAAGAAGCAACC 550
Query 582 CGATTTCTTCGAGGGGTTCTTGGATTATGAACCGGTTCTATCTCCCGATAATCCTTTCTC 641
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 551 CGATTTCTTTGAGGGGTTCTTGGATTATGAACCGGTTCTGTCTCCGGATAATCCTTTCTC 610
Query 642 TGAACCCACAAAAGCTTCTCCTACAGCTTCTCTGAGCTCTCTTGAAGATAAAGATGTTTC 701
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 611 TGAACCCACAAAAGCTTCTCCTACAGCATCTCTGAGCTCTCTTGAAGATAAAGATGTTAC 670
Query 702 GTCCCCGGATTTCAAATTctctcctcctcctcccccacctccttctcctcctcAGTCGTC 761
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 671 GTCCCCGGATTTCAAATTCTCTCCTCCTCCTCCACCACCTCCTTCTCCTCCTCCGTCTTC 730
Query 762 GCCGCCATCACCACCGGAGAAAAACTCATCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 821
||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 731 GCCGCCACCACCACCAGTGAAAAACTCGTCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 790
Query 822 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 850
Query 882 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACACC 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 851 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACGCC 910
Query 942 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCTCAGTTTTGGCCTGAGATTAT 1001
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCACAGTTTTGGCCTGAGATTAT 970
Query 1002 TCAGAA 1007
||||||
Sbjct 971 TCAGAA 976
> Ahg939639 jgi|Araly1|939639|scaffold_600183.1
Length=340
Score = 311 bits (168), Expect = 9e-84
Identities = 202/219 (92%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1009 TGAGACCAGCCGTTTGCTCTGGTCTAGACCATGGGCTAGAGGACTGGCTGATTCACCACC 1068
|||||| | | ||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 110 TGAGACAAACAGTTTGCTCTGGTCTAGACCATCGGCTAGAGGACTGGATGATTCACCACC 169
Query 1069 ACAAGATCCACATAAACCAACCATCTTCGGCTTAAAACCATGGTCACCATCACAACGCCT 1128
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 170 ACAAGGTCCACATAAACCAACCATGTTCGGCTTAAAACCATGGTCACCATCACAACGCGT 229
Query 1129 GATTTTCAGAATGTTACCAAAAAACGTTCCAATCCCGCCATCGGGACCAAGCCGAAAAGA 1188
| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 230 GGTTTTCAGAATGTTACCAAAAAACGTTCCGATCCCGCCATCCGGACCGAGCCGTAAAGA 289
Query 1189 AACTCCTCCATCTCCGCCTAGATCCGTATGATACTCGTT 1227
|||||||||||| || ||||||||||| ||||| |||||
Sbjct 290 AACTCCTCCATCGCCTCCTAGATCCGTGTGATAATCGTT 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49941021270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5