BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02600.2 Length=1335 Score E Sequences producing significant alignments: (Bits) Value Ahg939640 jgi|Araly1|939640|scaffold_600184.1 1533 0.0 Ahg939639 jgi|Araly1|939639|scaffold_600183.1 311 9e-84 > Ahg939640 jgi|Araly1|939640|scaffold_600184.1 Length=1000 Score = 1533 bits (830), Expect = 0.0 Identities = 921/966 (95%), Gaps = 2/966 (0%) Strand=Plus/Plus Query 43 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACAACCCTTTGCTCAACCATGGAT 102 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 12 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACGACCCTTTGCTCAACCATGGAC 71 Query 103 CAAACCTCACAACCTTCTTCTTCTTCTTCAGCCACGATCCGGCTCGGTGGTCGAGCCATT 162 ||||||||||||||||| ||||| |||||| || | |||||||| |||||||||||||| Sbjct 72 CAAACCTCACAACCTTCATCTTCCTCTTCATCCGCAATCCGGCTTGGTGGTCGAGCCATC 131 Query 163 GACCGTCATAACCCAATCATACGTGACGGTCGGAGACTCACTCCTCCACCTTCCCCAAAC 222 || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | Sbjct 132 GATCGTCATAACCCAATCATACGTGACGGTCGGAGACTGACTCCTCCACCTTCTCCAAGC 191 Query 223 CTTAATCCCTCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGACTAGGT 282 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 192 CTTAATCCATCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGATTAGGT 251 Query 283 CTCGAGAGTAGTGAACAAAAACGGT-TAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 341 || ||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| Sbjct 252 CTTGAGAGTAGTGAGCAAAAAC-GTGTAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 310 Query 342 TGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACACCTCAGGGTTCTTCAAGGTA 401 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 311 CGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACTCCTCAGGGTTCTTCAAGGTA 370 Query 402 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGACCCGATTCCAATACC 461 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 371 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGAACCGATTCCACTACC 430 Query 462 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTAAATAATTTTCATGAAGATCGACT 521 |||||||||||||||||||||||||||||||||||| ||||| |||||||||| | ||| Sbjct 431 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTGGATAATCTTCATGAAGAGCAACT 490 Query 522 CATAATAAACGCCTCAAAGTATCTATCAACTTCTGCTTCTTTCTTGGAGAAGAAGCAACC 581 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 491 GATTATAAACGCCTCAAAGTATCTATCAACTTCTGCGTCTTTCTTGGAGAAGAAGCAACC 550 Query 582 CGATTTCTTCGAGGGGTTCTTGGATTATGAACCGGTTCTATCTCCCGATAATCCTTTCTC 641 ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 551 CGATTTCTTTGAGGGGTTCTTGGATTATGAACCGGTTCTGTCTCCGGATAATCCTTTCTC 610 Query 642 TGAACCCACAAAAGCTTCTCCTACAGCTTCTCTGAGCTCTCTTGAAGATAAAGATGTTTC 701 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 611 TGAACCCACAAAAGCTTCTCCTACAGCATCTCTGAGCTCTCTTGAAGATAAAGATGTTAC 670 Query 702 GTCCCCGGATTTCAAATTctctcctcctcctcccccacctccttctcctcctcAGTCGTC 761 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || Sbjct 671 GTCCCCGGATTTCAAATTCTCTCCTCCTCCTCCACCACCTCCTTCTCCTCCTCCGTCTTC 730 Query 762 GCCGCCATCACCACCGGAGAAAAACTCATCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 821 ||||||| ||||||| | ||||||||| |||||||||||||||||||||||||||||||| Sbjct 731 GCCGCCACCACCACCAGTGAAAAACTCGTCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 790 Query 822 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 850 Query 882 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACACC 941 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 851 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACGCC 910 Query 942 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCTCAGTTTTGGCCTGAGATTAT 1001 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 911 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCACAGTTTTGGCCTGAGATTAT 970 Query 1002 TCAGAA 1007 |||||| Sbjct 971 TCAGAA 976 > Ahg939639 jgi|Araly1|939639|scaffold_600183.1 Length=340 Score = 311 bits (168), Expect = 9e-84 Identities = 202/219 (92%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 1009 TGAGACCAGCCGTTTGCTCTGGTCTAGACCATGGGCTAGAGGACTGGCTGATTCACCACC 1068 |||||| | | ||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 110 TGAGACAAACAGTTTGCTCTGGTCTAGACCATCGGCTAGAGGACTGGATGATTCACCACC 169 Query 1069 ACAAGATCCACATAAACCAACCATCTTCGGCTTAAAACCATGGTCACCATCACAACGCCT 1128 ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 170 ACAAGGTCCACATAAACCAACCATGTTCGGCTTAAAACCATGGTCACCATCACAACGCGT 229 Query 1129 GATTTTCAGAATGTTACCAAAAAACGTTCCAATCCCGCCATCGGGACCAAGCCGAAAAGA 1188 | |||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||| Sbjct 230 GGTTTTCAGAATGTTACCAAAAAACGTTCCGATCCCGCCATCCGGACCGAGCCGTAAAGA 289 Query 1189 AACTCCTCCATCTCCGCCTAGATCCGTATGATACTCGTT 1227 |||||||||||| || ||||||||||| ||||| ||||| Sbjct 290 AACTCCTCCATCGCCTCCTAGATCCGTGTGATAATCGTT 328 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49941021270 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5