BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02610.2
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487040 jgi|Araly1|487040|fgenesh2_kg.6__174__AT5G02610.1 472 2e-132
Ahg341089 jgi|Araly1|341089|fgenesh1_pg.C_scaffold_3000852 292 2e-78
> Ahg487040 jgi|Araly1|487040|fgenesh2_kg.6__174__AT5G02610.1
Length=558
Score = 472 bits (255), Expect = 2e-132
Identities = 326/356 (92%), Gaps = 21/356 (6%)
Strand=Plus/Plus
Query 311 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAGCAGAAA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGATCTCCCAGAAGCAGAAA 283
Query 371 TCTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAG 430
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TTTGCTTTAAGAGAGGCATACAAGAACAAGAAGCTCTTGCCTCTTGATCTCCGTCCCAAG 343
Query 431 AAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGCGT 490
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AAAACACGTGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGCGT 403
Query 491 GAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTACGCTATCAAAGTGTAGTTTCAT 550
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 404 GAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTATGCTATCAAAGCGTAGTTTCAT 463
Query 551 TCTCCCAGCTCTAGCTTCTAGAAATGAATGATTCAGCCTTTGATTATCGGCTTATGTTAT 610
|| || |||| |||||||||||||||||| | || || || | | || |
Sbjct 464 TCACC-AGCTTTAGCTTCTAGAAATGAAT----CGGC-TT--AT----G--T-AT-T--- 504
Query 611 CTCCTCTCTTTTTGTCCAACCTTATTAATTTTAGTTGTACTGAAGTTTTGTTATCA 666
||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||
Sbjct 505 CTCCTCTCTTTTTGTCCAACCTT-TTA-TTTTAGTTTTGCTGAAGTTTTGTTATCA 558
Score = 344 bits (186), Expect = 5e-94
Identities = 213/226 (94%), Gaps = 1/226 (0%)
Strand=Plus/Plus
Query 18 ATCGTATAAATTTTCTTCTTCAACAAAATTAGGGTTTGGAGCCAGAAAAGAGCAAATAGG 77
|||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| || |
Sbjct 1 ATCGTATAAATTATCTTCTTCATCAAAATTAGGGTTTGGAGCCAGAAACGAGCAAGTA-G 59
Query 78 CGGCACATCAGTTCTCAACACTCACGATGGCGAGAATTAAGGTTCATGAGCTTAGAGATA 137
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 CGGCACATCAGTTCTCAACACTCACGATGGCGAGGATTAAGGTTCATGAGCTTAGAGATA 119
Query 138 AATCAAAGACCGATCTTCAGAATCAGTTGAAGGAATTCAAGGCTGAACTCGCTCTCCTCC 197
|||||||||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 120 AATCAAAGACTGATCTCCAGAATCAGTTGAAGGAATTCAAGGCTGAGCTAGCTCTTCTCC 179
Query 198 GTGTCGCTAAAGTCACCGGAGGCGCTCCCAACAAGCTCTCCAAAAT 243
|||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 180 GTGTCGCTAAAGTCACCGGAGGTGCTCCCAACAAGCTCTCTAAAAT 225
> Ahg341089 jgi|Araly1|341089|fgenesh1_pg.C_scaffold_3000852
Length=1302
Score = 292 bits (158), Expect = 2e-78
Identities = 208/232 (90%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 311 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGAT-CTCCCAGAAGCAGAA 369
|||||||| ||| | ||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 1069 ATCAAGGTGGTGCGTAAATCCATTGCTCAGGTTTTGACAGTG-TCCTCTCAGAAGCAGAA 1127
Query 370 ATCTGCTTTAAGAGAGGCATACAAGAACAAGAAG-CTCTTGCCTCTTGATCTCCGTCCCA 428
|||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1128 GTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTTCTT-CCTCTTGATCTCCGTCCCA 1186
Query 429 AGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGC 488
|||| || || |||||||| ||||| |||||||| || ||||| || |||||||||||||
Sbjct 1187 AGAAGACCCGTGCTATCCGCAGACGCCTCACCAAACACCAGGCCTCTTTGAAGACAGAGC 1246
Query 489 GTGAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTACGCTATCAAAGT 540
||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1247 GTGAGAAGAAGAAGGAGATGTATTTCCCAATAAGGAAGTACGCTATCAAAGT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29430891924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5