BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02630.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892173 jgi|Araly1|892173|Al_scaffold_0006_169 1821 0.0
> Ahg892173 jgi|Araly1|892173|Al_scaffold_0006_169
Length=1302
Score = 1821 bits (986), Expect = 0.0
Identities = 1202/1304 (92%), Gaps = 23/1304 (2%)
Strand=Plus/Plus
Query 28 ATGACGATATTACCCTTTCTCGCCGCCGTATTCGTCCTCCAACTCCTCTCAACTCTCACG 87
|||||||||||||||||| |||| ||||| |||||||||| ||| |||| | |||||||
Sbjct 1 ATGACGATATTACCCTTTTTCGCTGCCGTCGTCGTCCTCCAGCTCTTCTCTAGTCTCACG 60
Query 88 GTCGCGGAGATCAAGTCTTTCACTATCTCCAACGATTCTCGGCCAGTGATTCTCTTGGAG 147
|| |||||||| |||||| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 61 GTGGCGGAGATTAAGTCTCTGACTATCTCCAACGATTCTCGGCCAATAATTCTCTTGGAG 120
Query 148 AAATTCGGTATTATTGAGATTGGTCATGTAACCGTCTCTGTTTCCTCTGTTTCAGTATTG 207
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 AAATTCGTTATTATTGAGATTGGTCATGTAACCGTCTCTGTTTCCTCTGTTTCAGTATCG 180
Query 208 TCTCC--GA--TT---C---T--AGACTCGTCGAAATTAGGGTTCTTTGTTCTATCAGAA 255
||||| | || | | |||||||||||||||||||||| ||||||||||||||
Sbjct 181 TCTCCTTCATCTTCCCCGGTTCCAGACTCGTCGAAATTAGGGTTCCTTGTTCTATCAGAA 240
Query 256 GAATCTCTTCCTCATGTACTCCTCGAGCTCCAGCAAAACTTTAGCTTCTGCGTTCTTGAT 315
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAATCTCTTCCTGAGGTACTCCTCGAGCTCCAGCAAAACTTTAGCTTCTGCGTTCTTGAT 300
Query 316 TCACACTACATACTTCATTTCTTCACCTTCGTCGATCTCTCTCCTCCTCCTCGCTCCCAG 375
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 301 TCACACTACATACTCCATTTCTTCACCTTCATCGATCTCTCTCCTCCTCCTCGCTCTCAG 360
Query 376 TTCAGTAAATCTTATCCGATAACGTCTCCAAACGATTACTCTCTGTTCTTCGCTAATTGC 435
|||| ||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 361 TTCAATAAATCTTATCTGATAACGTCTCCTAGCGATTACTCTCTGTTCTTCGCTAATTGC 420
Query 436 GTACCAGAAACTAGGGTTTCGATGAAGGTCCACA-CGGAGATTTATCACGATCTATATCC 494
||||| ||||||||||||||||||||||||| | | |||||||||||| ||||| ||||
Sbjct 421 GTACCGGAAACTAGGGTTTCGATGAAGGTCC-GAGCAGAGATTTATCACAATCTAGATCC 479
Query 495 AAACGGG------TCAAGAGATTACTTACTAGCCGGGTCAGCCCAGTTACCGGGTTTGTA 548
||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 480 AAACGGGTCAAACTCAAAAGATTACTTACTAGCCGGGTCAACCCAGTTACCTGGTTTGTA 539
Query 549 TCTCGTCTTTTTTCTCTGTTACTTGAGTTTCCTCTGTTTCTGGCTCTGTTTCTGCTGGAA 608
||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TCTCGTCTTCTCTCTCTGTTACTTGAGTTTCCTCTGTTTCTGGTTCTGTTTCTGCTGGAA 599
Query 609 TC-ATAAGCAAATTGTTAAAAGGATTCACCTTTTAATGACGGCTCTGCTTCTAGTGAAAT 667
| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 600 -CAATAAGCAAATTGCTAAAAGGATTCACCTTTTAATGACGGTTCTGCTTCTAGTGAAAT 658
Query 668 CTCTGACTCTGATTTGTGCTGCTGTGTATAAACACTACGTGAAAGTCACAGGCACAGCTC 727
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 659 CTCTGACTCTGATTTGTGCTGCTGTGTATAAACATTACGTGAAAGTCACAGGCACAGCTC 718
Query 728 ATGGCTGGAACATTGTTTTCTACATTTTCCAATTCATTAGTGTTGTTTTGCTCTTCATGG 787
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 719 ATGGCTGGAACATTGTTTTCTACATTTTCCAATTCATTAGTGTCGTTTTGCTTTTCACGG 778
Query 788 TGATTGTTCTAATCGGAAACGGTTGGTCTTTCTTGAAACCGAAGCTACATGTTAAGGAGA 847
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 779 TGATTGTTCTAATCGGAAACGGTTGGTCTTTCTTGAAACTGAAGCGACATGGTAAGGAGA 838
Query 848 AGAAATTGTTGGTGATTGTTGTTCCGCTTCAGGTTTTAGCTAACATTGCTTCCATTGTGA 907
|||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 AGAAGTTGTTGATGATTGTTGTTCCGCTTCAGGTTTTAGCTAACATTGCTTCGATTGTGA 898
Query 908 TTGGAGAGACTGGACCGTACACCCAAGATTGGGTGAGTTGGAACCAGATCTTCTTCCTAG 967
||||||| |||||||||||||| ||||||||||||| |||||||||||||||||| || |
Sbjct 899 TTGGAGAAACTGGACCGTACACTCAAGATTGGGTGATTTGGAACCAGATCTTCTTGCTTG 958
Query 968 CTGATATAACTTGCTGTTGTGCGATTGTATTCGCTATGGTTTGGTCCATGTGTTGTCTAA 1027
|||||||||||||||||| || |||||||||||| ||||||||||| ||||||||||||
Sbjct 959 CTGATATAACTTGCTGTTTTGTGATTGTATTCGCAATGGTTTGGTCGATGTGTTGTCTAC 1018
Query 1028 GAGAGACATCGAAAACCGATGGGAAAGCGGTAAAGAACTTAGCCAAGTTACCAGTTTTAA 1087
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1019 GAGAGACATCGAAAACCGATGGGAAAGCGGTGAAGAACTTAGCCAAGTTACCAGTTTTTA 1078
Query 1088 GGAAATTTTACGTTTTGGTTATTGGATATTTGTTCTTCACGAGGATCGTTGTGGTTGTTA 1147
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 GGAAATTCTACGTTTTGGTCATTGGATATTTGTTCTTCACAAGGATCGTTGTGGTTGTTG 1138
Query 1148 TGAAGATGAAAGCAGATTTTACGTATCAGTGGGTGAGCAATGCAGCTGAGGAAATTGCAA 1207
||||||||||| ||||||||| |||||||||| ||||||||||| |||||||||||||||
Sbjct 1139 TGAAGATGAAAACAGATTTTAGGTATCAGTGGCTGAGCAATGCATCTGAGGAAATTGCAA 1198
Query 1208 CTCTTTCGTTTTATTGTTTGATGTTTTATATGTTTAGGCCAATAGAGAAGAACGAGTATT 1267
||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1199 CTCTTGCGTTTTATAGTTTGATGTTTTATATGTTTAGGCCAATGGAGAAGAGTGAGTATT 1258
Query 1268 GTGATGTTGATGATGAAGAAGAAATTGTAGAGCTTTCTCTCAAG 1311
|||||||||| |||||||||||| || ||||||||| ||||||
Sbjct 1259 TTGATGTTGATAATGAAGAAGAAACTGCAGAGCTTTC-CTCAAG 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5