BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02640.1
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487043 jgi|Araly1|487043|fgenesh2_kg.6__177__AT5G02640.1 883 0.0
> Ahg487043 jgi|Araly1|487043|fgenesh2_kg.6__177__AT5G02640.1
Length=669
Score = 883 bits (478), Expect = 0.0
Identities = 616/680 (91%), Gaps = 19/680 (3%)
Strand=Plus/Plus
Query 10 AAAAAAGTAATATCACAAATCAAAAACTA-AACA-TTGAGAATGAACTCAGTGTGTATCT 67
|||||| || |||||| ||| ||||| || || | ||||| |||||||||||||||||||
Sbjct 1 AAAAAA-TATTATCAC-AATTAAAAA-TATAAAACTTGAGGATGAACTCAGTGTGTATCT 57
Query 68 CCAGCTGCATCAACGATGCACACGACCCTCGCGTGCCGGTTCGTCCTGTACGTGCCTCCT 127
| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 58 CTAGCTGCATCAACGATGCACATGACCCTCGCGTGCCGGTTCGTCCTGTTCGTGCCTCCT 117
Query 128 ACGTGAATCTCTATAAGTGGCCGGAGTCCGACGCCGAGTTCGTCAGGTCCGTACGTCGTG 187
|||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 118 ACGTGAATCTCTATAAGTGGCCGGAGTCCGACGCCGAGTTCGTCCGCTCCGTCCGTCGTG 177
Query 188 GAGGCGGCCTACCGGCGGCCCGTGTAGTTGATAGCATATCTTGTCGACAGATGTATCTCC 247
|||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 178 GAGGCGGCGTACCCGCGGCGCGTGTAGTTGATAGCATATCTTGTCGACAGATGTATCTTC 237
Query 248 GTAGCTACACTTTCTCTCGGGAAGACGACGAGAGCAAATCGGAGAAGGTGTCGTCTGGGA 307
| |||||||||||||||||||||||||| ||||| ||||||||||| | || | | |
Sbjct 238 GGAGCTACACTTTCTCTCGGGAAGACGATGAGAGTAAATCGGAGAA-G-GT-GAC---AA 291
Query 308 CGCAGACGTCGTGTCTAGGGAGAGTTAAGGGAACAGCGTCGTCTCGACGTAAGAGTAAGG 367
|||||||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 292 CGCAGACGTCATGTCTAGGGAGGGTTAAGGAAACAGCGTCGTTTCGACGTAAGAGTAAGG 351
Query 368 AGGAAAATGGCATCATCATCGTTGAGAGTACAAAGCCGCGTCGTCGTGGTGAGAAGAGGA 427
|||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 352 AGGAAAATTG---CATCATCGTAGAGAGTACAAAGCCGCGTCGTCGTGGTGAGAGGAGGA 408
Query 428 GAGTTAGTAGGAAGAACAAACAAGAACAAGCTTGTTCTGTTATTTTAAGGATTTTTCGAA 487
| |||||||| ||||| |||||||||||||||||||||||||| || ||| |||||||||
Sbjct 409 GGGTTAGTAGAAAGAAGAAACAAGAACAAGCTTGTTCTGTTATGTTCAGGTTTTTTCGAA 468
Query 488 GGTTATTATCTTGTGCTGCTACCGTTGATGTTGTTGATCCAAACTAAATGAC-TTACTTT 546
||||||| |||||||||||||| || ||||||||||||||||||||||| || || |||
Sbjct 469 GGTTATTGTCTTGTGCTGCTACAGTAGATGTTGTTGATCCAAACTAAATTACTTTTTTTT 528
Query 547 TTC--TTAAAATTATAATTAGTATTTGGAATTTTTGTTTCTTTGTTTTAATAGTGATCCT 604
||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 529 TTCTGTTCAAATTATAATTAATATTTGGAATTTTTGTTTCTTTGTTTTAATAGTCATCCT 588
Query 605 TAAATGCATGGTCTTTTAA-TTATATTTACttttttgtttg-ttttgttttgtATTTATA 662
|||||||||||| |||||| |||||| ||||||||| |||| |||||||||||||||| |
Sbjct 589 TAAATGCATGGTTTTTTAAATTATATCTACTTTTTTTTTTGGTTTTGTTTTGTATTTAAA 648
Query 663 CTTGTAATATATAGAATTTT 682
||||||||||||||||||||
Sbjct 649 CTTGTAATATATAGAATTTT 668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25313616888
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5