BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02730.1 Length=618 Score E Sequences producing significant alignments: (Bits) Value Ahg487046 jgi|Araly1|487046|fgenesh2_kg.6__180__AT5G02730.1 891 0.0 > Ahg487046 jgi|Araly1|487046|fgenesh2_kg.6__180__AT5G02730.1 Length=591 Score = 891 bits (482), Expect = 0.0 Identities = 559/596 (94%), Gaps = 6/596 (1%) Strand=Plus/Plus Query 1 ATGTCGTCGTCTTCGTTATATCATCCGTTTTGtctctccatctcctccgttctcctcctc 60 ||||||||||||||||||||| ||||||||||||||||| |||||| | ||| |||||| Sbjct 1 ATGTCGTCGTCTTCGTTATATAATCCGTTTTGTCTCTCCGTCTCCT-C--TCTTCTCCTC 57 Query 61 ctcctattaatcttctccggagaatttccctccACCGCAGGAAC-TTCATCACCGGACAC 119 ||| |||||||||||||||| ||||||||||||||||| ||||| ||| || |||||||| Sbjct 58 CTCATATTAATCTTCTCCGGCGAATTTCCCTCCACCGCCGGAACTTTC-TCGCCGGACAC 116 Query 120 CAAAGCCGCAGCCGCACGTGCGACTAACAGAGGAAGGAGGAATAAGCAATCCGCGGAGTT 179 ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| Sbjct 117 CAAAGCCGCAGCCGCACGTGCTATTAACAGAGGAAGGAGGAATAAGCAATCGGCGGAGTT 176 Query 180 CTTACTCGCGCACAACGCAGCGCGTGTAGCTTCAGGCGCGTCGAATCTAAGATGGGATCA 239 ||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 177 CTTACTCGCTCACAACGCAGCGCGTGGAGCTTCAGGCGCGTCGAATCTAAAATGGGATCA 236 Query 240 AGGGTTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC 299 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 AGGCCTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC 296 Query 300 CCATTCAGGTGGGCCTTACGGAGAGAATATTTTCAGGTACCAAAGGAGTGAGAATTGGTC 359 ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 297 CCATTCAGGTGGGCCTTACGGAGAGAATATTTTTTGGTACCAAAGAAGTGAGAATTGGTC 356 Query 360 GCCGAGGAGAGTTGTTGATAAATGGATGGATGAAAGTTTGAACTACGATCGGGTGGCTAA 419 |||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||| Sbjct 357 GCCGAGGAGAGTTGTTGAAAAATGGATGGATGAAAGTTTAAACTACGATCGGCTGACTAA 416 Query 420 TACGTGCAAGTCTGGTGCCATGTGCGGTCATTATACGCAGATCGTTTGGCGTACAACCAC 479 |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 417 TACGTGTAAGTCTGGTGCGATGTGCGGTCATTATACGCAGATCATTTGGCGTACAACCAC 476 Query 480 AGCCGTTGGATGCGCTCGTTCTAAATGCGATAACAACCGTGGATTCCTAGTGATTTGCGA 539 |||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| Sbjct 477 AGCCGTTGGATGCGCTCGTTCTAAGTGTGATAACGACCGTGGATTCCTAGTGATTTGCGA 536 Query 540 GTATTCACCTTCGGGGAATTACGAAGGCGAAAGTCCTTTTGATATACCTAAAATAA 595 ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||| Sbjct 537 GTACTCACCTTCGGGAAATTACGAAGGCGAAAGTCCTTTTGATATACTTAAA-TAA 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22606889781 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5