BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G02730.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487046 jgi|Araly1|487046|fgenesh2_kg.6__180__AT5G02730.1          891    0.0  


> Ahg487046 jgi|Araly1|487046|fgenesh2_kg.6__180__AT5G02730.1
Length=591

 Score =  891 bits (482),  Expect = 0.0
 Identities = 559/596 (94%), Gaps = 6/596 (1%)
 Strand=Plus/Plus

Query  1    ATGTCGTCGTCTTCGTTATATCATCCGTTTTGtctctccatctcctccgttctcctcctc  60
            ||||||||||||||||||||| ||||||||||||||||| |||||| |  ||| ||||||
Sbjct  1    ATGTCGTCGTCTTCGTTATATAATCCGTTTTGTCTCTCCGTCTCCT-C--TCTTCTCCTC  57

Query  61   ctcctattaatcttctccggagaatttccctccACCGCAGGAAC-TTCATCACCGGACAC  119
            ||| |||||||||||||||| ||||||||||||||||| ||||| ||| || ||||||||
Sbjct  58   CTCATATTAATCTTCTCCGGCGAATTTCCCTCCACCGCCGGAACTTTC-TCGCCGGACAC  116

Query  120  CAAAGCCGCAGCCGCACGTGCGACTAACAGAGGAAGGAGGAATAAGCAATCCGCGGAGTT  179
            ||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||
Sbjct  117  CAAAGCCGCAGCCGCACGTGCTATTAACAGAGGAAGGAGGAATAAGCAATCGGCGGAGTT  176

Query  180  CTTACTCGCGCACAACGCAGCGCGTGTAGCTTCAGGCGCGTCGAATCTAAGATGGGATCA  239
            ||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  177  CTTACTCGCTCACAACGCAGCGCGTGGAGCTTCAGGCGCGTCGAATCTAAAATGGGATCA  236

Query  240  AGGGTTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC  299
            |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  237  AGGCCTGGCCCGTTTCGCATCTAAATGGGCCAAACAACGTAAATCGGATTGTAAAATGAC  296

Query  300  CCATTCAGGTGGGCCTTACGGAGAGAATATTTTCAGGTACCAAAGGAGTGAGAATTGGTC  359
            |||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||
Sbjct  297  CCATTCAGGTGGGCCTTACGGAGAGAATATTTTTTGGTACCAAAGAAGTGAGAATTGGTC  356

Query  360  GCCGAGGAGAGTTGTTGATAAATGGATGGATGAAAGTTTGAACTACGATCGGGTGGCTAA  419
            |||||||||||||||||| |||||||||||||||||||| |||||||||||| || ||||
Sbjct  357  GCCGAGGAGAGTTGTTGAAAAATGGATGGATGAAAGTTTAAACTACGATCGGCTGACTAA  416

Query  420  TACGTGCAAGTCTGGTGCCATGTGCGGTCATTATACGCAGATCGTTTGGCGTACAACCAC  479
            |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct  417  TACGTGTAAGTCTGGTGCGATGTGCGGTCATTATACGCAGATCATTTGGCGTACAACCAC  476

Query  480  AGCCGTTGGATGCGCTCGTTCTAAATGCGATAACAACCGTGGATTCCTAGTGATTTGCGA  539
            |||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||
Sbjct  477  AGCCGTTGGATGCGCTCGTTCTAAGTGTGATAACGACCGTGGATTCCTAGTGATTTGCGA  536

Query  540  GTATTCACCTTCGGGGAATTACGAAGGCGAAAGTCCTTTTGATATACCTAAAATAA  595
            ||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct  537  GTACTCACCTTCGGGAAATTACGAAGGCGAAAGTCCTTTTGATATACTTAAA-TAA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5