BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02740.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487048 jgi|Araly1|487048|fgenesh2_kg.6__182__AT5G02740.1 1598 0.0
> Ahg487048 jgi|Araly1|487048|fgenesh2_kg.6__182__AT5G02740.1
Length=1117
Score = 1598 bits (865), Expect = 0.0
Identities = 1034/1113 (93%), Gaps = 21/1113 (2%)
Strand=Plus/Plus
Query 24 TTCGTCATCGTCACCACTGAGA--CTCTCTGTAGAGAAAAACCCTAGACATTTTCCGGTG 81
||||||||||| |||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 12 TTCGTCATCGT---CACTGAGACTCTCTCTGTAGAGAAAAACCCTA-AGATTTTCCGGTG 67
Query 82 AGAAATGAGTATCACTCGTAGCGCGATCAGATCGAGTTTGTGTCTCCGGAAATTGGATCC 141
|||||||||||||| ||||||||||||||||||||| |||||||||||| | ||||||||
Sbjct 68 AGAAATGAGTATCATTCGTAGCGCGATCAGATCGAGCTTGTGTCTCCGGCAGTTGGATCC 127
Query 142 GGAAATCAGTCGTAGCTCGCTTCCGTTTCTTCAAGAGTGGAGGAAATGCCTATCTACCGC 201
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GGCAATCAGTCGTAGTTCGCTTCCGTTTCTTCAAGAGTGGAGGAAATGCCTATCTACCGC 187
Query 202 CACGGAGCAGCCTCCTCCTGCCTCTCCGTTACCACCGCCTCCGGGAGGTTCTCCGGGAGA 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 188 CACGGAGCAGCCTCCTCCTGCCTCTCCGTTACCACCGCCTCCGGGAGGTTCTCCAGGACA 247
Query 262 AGGGAGGTTTTATGGGAAGTTTTCAGGCTTTTCAAAACATGCTCTGAAGACAGACATAAT 321
|| ||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 248 AGAGAGGTTTTATGGGAAATTTTCAGGCTTTTCAAAACATGCTCTGAAGACTGATATTAT 307
Query 322 GAACGTACTCGAGGGCTGCAGTCTGACATCAGATGATCTCAAATTCAACTATCCGCGTGG 381
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 308 GAACATACTCGAGGGCTGCAGTGTGACACCAGATGATCTCAAATTCAACTATCCCCGTGG 367
Query 382 CGGAAACTTAACTCCTGCGGCAGTCTTTGTGCAGTTCCCATCCCTTTCCGCATATGATAA 441
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 368 TGGAAACTTAACTCCTGCGGCAGTTTTTGTGCAGTTCCCTTCCCTTTCCGCATATGATAA 427
Query 442 AGCACTGCGGAATATCGCAAAGAAAGGAAAGCTATATAGATTAGAAAAGGCTGCTCGTGC 501
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 428 AGCACTGCGGAATATCGCAAAGAAAGGAAAGCTATATAGATTAGAAAGGGCTGCTCGTGC 487
Query 502 TCAGTGGGATCCCATTGTTCCTTATGAGGGGAAAGTGGTTGCACTACATGGGATTCCGGT 561
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 488 TCAGTGGGATCCCGTTGTTCCTTATGAGGGGAAAGTGGTTGCACTACATGGGCTTCCGGT 547
Query 562 GAATGCTATAACAGATGACATAGATAGGTTCTTATCTGGCTGTCTCTATTATCCTGGATC 621
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GAATGCTATAACAGAGGACATAGATAGGTTCTTATCTGGCTGTCTCTATTATCCTGGATC 607
Query 622 CATCCAGTTCCTCACAGTTCAAGGACTTGGAACTTCAAAGAGGGTAGCATTGGTGCGTTT 681
|||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||
Sbjct 608 CATCCAATTCCTCACAGTCCAAGGACTTGGAACTTCGAAGAGGGTGGCGTTGGTGCGTTT 667
Query 682 CACATCACAAACCCAGGCAATGAACGCATACATTACAAAGAACAGGAACTTCCTTCTCAA 741
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 668 CACATCACAGACCCAGGCAATGAATGCATACATTACAAAGAACAGGAACTTCCTTCTCAA 727
Query 742 CCAACGAATCACATTGCAAGTTCTGCAGTAATTTCTTAGTTTCT-ATTCCATTCTCGTGG 800
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 728 CCAACGAATCACATTGCAAGTTCTGCAGTAATTTCTCAGTTTCCCATTCCATTCTCGTGG 787
Query 801 TGTATTCCAATGGTAAGAGATCCAAAGCACTTTCTTTTGTCTCTACTGTTGGGATGTTTT 860
||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 788 TGTATTCCAGTGGTAAGAGATCCAAAGCACTTTTTTTTTTCTCTACTGTTGGGATGTTTT 847
Query 861 AGGTCGATTTGGTTATCAAAAATTTCCATCTGCAAACTTCACGATGCTTGATAAACTGTT 920
||||||| ||| |||||||||| ||||||| | |||||||| |||||| || ||||| ||
Sbjct 848 AGGTCGACTTGATTATCAAAAAATTCCATCAGAAAACTTCATGATGCTAGAAAAACTATT 907
Query 921 GTTGTCTCTCTCTTCCCTG-G-TTCAGT-TCGAAGTTGATGAATAACAAATACATGTGTC 977
||||||||||| | ||||| | |||| | | ||||||||||||||||||||| |||||||
Sbjct 908 GTTGTCTCTCT-T-CCCTGTGGTTCAATAT-GAAGTTGATGAATAACAAATAAATGTGTC 964
Query 978 TTAGTAGAAGCAGAAAGTCTCACATAAGCAGATGTTA--T----A-CTATGTGATCTTTT 1030
||||||| |||||||||| ||| ||||||||||| || | | ||||||||||||||
Sbjct 965 TTAGTAGGAGCAGAAAGTTTCAGATAAGCAGATGCTAAATTGTTAACTATGTGATCTTTT 1024
Query 1031 TCTCTTTCTTGTATTTTGACTAAAGCTGTTATCATTGGATGCCCATGTGG-TGAAGTGAT 1089
| |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1025 TTTCTTTCGTGTATTTTGACTAAAGCTGTTATCTTTGGATGCCCATGTGGGTGAAGTGAT 1084
Query 1090 CCATCGTGCTTTTAGAAAGTGAATGAATTTGTA 1122
|| || |||||||||||||||||||| ||||||
Sbjct 1085 CCGTCTTGCTTTTAGAAAGTGAATGACTTTGTA 1117
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5