BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02750.1 Length=1086 Score E Sequences producing significant alignments: (Bits) Value Ahg487049 jgi|Araly1|487049|fgenesh2_kg.6__183__AT5G02750.1 1384 0.0 > Ahg487049 jgi|Araly1|487049|fgenesh2_kg.6__183__AT5G02750.1 Length=953 Score = 1384 bits (749), Expect = 0.0 Identities = 887/954 (93%), Gaps = 7/954 (1%) Strand=Plus/Plus Query 5 AATATGGAAGACGAAAACACCACAATCATCATGGCGTCACTCTCTGCTCTTTCTCCTTCA 64 |||||||| || | ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AATATGGAGGAAGGAAACATCACAATCATCATGGCGTCACTCTCTACTCTTTCTCCTTCA 60 Query 65 CACCTCACGAATCTGACTCACTCCATTCTCTCTATCTCCCACCACCATCGCCGCCGCCTC 124 |||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 61 CACCTCACAAATCTCACTCACTCCCTTCTCTCAATCTCCCACCACCATCGCCGCCGCCTC 120 Query 125 GGTGCAGtcctctcctctccgacccttttctccctcactctccgccacctcctctctcta 184 | | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCCACCGTCCTCTCATCTCCGACCCTTTTCTCCCTCACTCTCCGCCACCTCCTCTCTCTA 180 Query 185 tctcttcctGACAAAACTCACCTCATCGCCAACCATCTTCTCTCCCTCCTCCATCCTCTT 244 |||||||| |||||||| |||||||||||||||||||| || || ||||| || |||||| Sbjct 181 TCTCTTCCCGACAAAACCCACCTCATCGCCAACCATCTCCTTTCTCTCCTTCACCCTCTT 240 Query 245 CTCATCCACCGTAAACACCACTCCTCCTACGCCGTCACCATGAAGCTCCGGGACCTAGAC 304 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct 241 CTCATCCACCGTAAACATCACTCCTCCTCCACCGTCACCATGAAGCTCCGGGACCTAGAC 300 Query 305 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCTTCATCCAGATGTTCTAGAA 364 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 301 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCATCATCCAGATGTTTTAGAA 360 Query 365 GCTTCCGCTGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATAATATGTTAAGT 424 || ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 361 GCGTCCGCCGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATACCATGTTAACT 420 Query 425 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCGTACATAGAAACCCTA 484 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 421 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCTTACATAGAAACCCTA 480 Query 485 GTTAGATGCAAAAGATTTGTTGACATAATGGGAGGCTATAACCATCTTCGTCGAAGAGAT 544 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||| Sbjct 481 GTTAGATGCAAAAGGTTTGTTGACATAATGGGAGGCTACAACCATCTTCGCCGACGAGAT 540 Query 545 CAAAAAGAAGGCTACCAAGTTCCAGCCGCTAGAGCGGCTGTGGTGGCGTTACGGGCGGTT 604 ||||||||||||||| ||||||| || |||||||||||||| ||||||||||| |||||| Sbjct 541 CAAAAAGAAGGCTACGAAGTTCCGGCTGCTAGAGCGGCTGTTGTGGCGTTACGAGCGGTT 600 Query 605 GAGGTTTTCAACGTCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 664 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GAGGTTTTCAGCGCCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 660 Query 665 GAGATGAGCGAAGGAAGAGATGTGTGTGAAATGCCATGTCAGCATTTCTTTCACTGGAAG 724 ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| Sbjct 661 GAGATGAGCGAAGGAAGAGATGTTTGTGAAATGCCATGTCAGCATGTGTTTCACTGGAAG 720 Query 725 TGTATCTTGCCGTGGCTAAGCAAGAAGAACACGTGTCCGTTCTGCAGGTTTCAGCTTCCC 784 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 721 TGTATCTTGCCGTGGCTAAGCAAAAAGAACACGTGTCCTTTCTGCAGGTTTCAACTTCCC 780 Query 785 ACCGACGATGTCTTCTCAGAGATCCAACGGTTATGGGAGATCCTCGTCAAGAGTAGCGAG 844 ||||||||||||||||| |||||||||||| | |||||||| ||||||||||| |||||| Sbjct 781 ACCGACGATGTCTTCTCGGAGATCCAACGGCTGTGGGAGATGCTCGTCAAGAGCAGCGAG 840 Query 845 TTACACGTGGCGTAATCTCAG-TTTGCGGTGATGGGTACATGTGTAAGAGGAACTAAAGA 903 ||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||| ||| Sbjct 841 TTACACGTGGCGTAATCTCAGCTTT-CGGTGATGAATACATGTGTAAGAAGAACTATAGA 899 Query 904 AGCCTGTACATCGTAATCTA--A-TA-TA-CTATGTAGAATAATATATCAAGTA 952 ||| ||| |||||||||||| | || || |||||||||||||||||||||||| Sbjct 900 AGCGTGTTCATCGTAATCTAGTAATAATATCTATGTAGAATAATATATCAAGTA 953 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40448414937 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5