BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02750.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487049 jgi|Araly1|487049|fgenesh2_kg.6__183__AT5G02750.1 1384 0.0
> Ahg487049 jgi|Araly1|487049|fgenesh2_kg.6__183__AT5G02750.1
Length=953
Score = 1384 bits (749), Expect = 0.0
Identities = 887/954 (93%), Gaps = 7/954 (1%)
Strand=Plus/Plus
Query 5 AATATGGAAGACGAAAACACCACAATCATCATGGCGTCACTCTCTGCTCTTTCTCCTTCA 64
|||||||| || | ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AATATGGAGGAAGGAAACATCACAATCATCATGGCGTCACTCTCTACTCTTTCTCCTTCA 60
Query 65 CACCTCACGAATCTGACTCACTCCATTCTCTCTATCTCCCACCACCATCGCCGCCGCCTC 124
|||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 61 CACCTCACAAATCTCACTCACTCCCTTCTCTCAATCTCCCACCACCATCGCCGCCGCCTC 120
Query 125 GGTGCAGtcctctcctctccgacccttttctccctcactctccgccacctcctctctcta 184
| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCACCGTCCTCTCATCTCCGACCCTTTTCTCCCTCACTCTCCGCCACCTCCTCTCTCTA 180
Query 185 tctcttcctGACAAAACTCACCTCATCGCCAACCATCTTCTCTCCCTCCTCCATCCTCTT 244
|||||||| |||||||| |||||||||||||||||||| || || ||||| || ||||||
Sbjct 181 TCTCTTCCCGACAAAACCCACCTCATCGCCAACCATCTCCTTTCTCTCCTTCACCCTCTT 240
Query 245 CTCATCCACCGTAAACACCACTCCTCCTACGCCGTCACCATGAAGCTCCGGGACCTAGAC 304
||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 241 CTCATCCACCGTAAACATCACTCCTCCTCCACCGTCACCATGAAGCTCCGGGACCTAGAC 300
Query 305 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCTTCATCCAGATGTTCTAGAA 364
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 301 GCGGTGGTCCTCCTCCTCTTTCTCTGCGAAACCCACCAGCATCATCCAGATGTTTTAGAA 360
Query 365 GCTTCCGCTGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATAATATGTTAAGT 424
|| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 361 GCGTCCGCCGATAATTGGCGGGAAATTCTCGGTAATACGTACTCTAATACCATGTTAACT 420
Query 425 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCGTACATAGAAACCCTA 484
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 AATAATTCCGGTCTTTGGACTTGCGATGCCGGAATCTTGATGCCTTACATAGAAACCCTA 480
Query 485 GTTAGATGCAAAAGATTTGTTGACATAATGGGAGGCTATAACCATCTTCGTCGAAGAGAT 544
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 481 GTTAGATGCAAAAGGTTTGTTGACATAATGGGAGGCTACAACCATCTTCGCCGACGAGAT 540
Query 545 CAAAAAGAAGGCTACCAAGTTCCAGCCGCTAGAGCGGCTGTGGTGGCGTTACGGGCGGTT 604
||||||||||||||| ||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 541 CAAAAAGAAGGCTACGAAGTTCCGGCTGCTAGAGCGGCTGTTGTGGCGTTACGAGCGGTT 600
Query 605 GAGGTTTTCAACGTCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 664
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAGGTTTTCAGCGCCGCCGCTTCAAACGCCGGAGAAGTAGAATGCGTGATATGCAAGGAA 660
Query 665 GAGATGAGCGAAGGAAGAGATGTGTGTGAAATGCCATGTCAGCATTTCTTTCACTGGAAG 724
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 661 GAGATGAGCGAAGGAAGAGATGTTTGTGAAATGCCATGTCAGCATGTGTTTCACTGGAAG 720
Query 725 TGTATCTTGCCGTGGCTAAGCAAGAAGAACACGTGTCCGTTCTGCAGGTTTCAGCTTCCC 784
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 721 TGTATCTTGCCGTGGCTAAGCAAAAAGAACACGTGTCCTTTCTGCAGGTTTCAACTTCCC 780
Query 785 ACCGACGATGTCTTCTCAGAGATCCAACGGTTATGGGAGATCCTCGTCAAGAGTAGCGAG 844
||||||||||||||||| |||||||||||| | |||||||| ||||||||||| ||||||
Sbjct 781 ACCGACGATGTCTTCTCGGAGATCCAACGGCTGTGGGAGATGCTCGTCAAGAGCAGCGAG 840
Query 845 TTACACGTGGCGTAATCTCAG-TTTGCGGTGATGGGTACATGTGTAAGAGGAACTAAAGA 903
||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||| |||
Sbjct 841 TTACACGTGGCGTAATCTCAGCTTT-CGGTGATGAATACATGTGTAAGAAGAACTATAGA 899
Query 904 AGCCTGTACATCGTAATCTA--A-TA-TA-CTATGTAGAATAATATATCAAGTA 952
||| ||| |||||||||||| | || || ||||||||||||||||||||||||
Sbjct 900 AGCGTGTTCATCGTAATCTAGTAATAATATCTATGTAGAATAATATATCAAGTA 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5