BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02760.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939651 jgi|Araly1|939651|scaffold_600195.1 1877 0.0
Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1 147 3e-34
Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1 132 9e-30
> Ahg939651 jgi|Araly1|939651|scaffold_600195.1
Length=1155
Score = 1877 bits (1016), Expect = 0.0
Identities = 1111/1157 (96%), Gaps = 5/1157 (0%)
Strand=Plus/Plus
Query 102 GAAGATTACATACCTGAGAAAGATGGTTAAACCCTGTTGGAGAATAGGTGCCGGTATGGA 161
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAATATTACATACCTGAG-AAGATGGTTAAACCCTGTTGGAGAATAGGTGCCGGTATGGA 59
Query 162 GAGAAGTAAGATCAATCCCACAAAGGTTGATGGTTTGACATGGTACAAAGATCTTGGTCT 221
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 60 GAGAAGCAAGATCAATCCCACAAAGGTTGATGGCTTGACATGGTATAAAGATCTCGGCCT 119
Query 222 TCACACCTTTGGAGAGTTTTCCATGGCAATGATCCAAGCCAACAGTGTGATGGAGGATCA 281
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCACGCCTTCGGAGAGTTTTCCATGGCAATGATCCAAGCCAACAGTGTGATGGAGGATCA 179
Query 282 GTGCCAGATCGAATCAGGGCCGCTTACATTCAACAATCCGACAGTTCAAGGCACATTTGT 341
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 180 GTGCCAGATCGAATCAGGGCCACTTACATTCAACAATCCGACAGTTCAAGGCACGTTTGT 239
Query 342 TGGAGTTTACGATGGCCATGGAGGTCCAGAGGCTTCCAGATTCATTGCAGACAACATCTT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGGAGTTTACGATGGCCATGGAGGTCCAGAGGCTTCCAGATTCATTGCAGACAACATCTT 299
Query 402 CCCCAAGTTAAAGAAGTTTGCGTCCGAGGGTAGGGAGATTTCAGAGCAGGTGATCAGCAA 461
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 300 CCCCAAGTTAAAGAAGTTTGCCTCTGAGGGTAGGGAGATTTCAGAGCAGGTGATCAGCAA 359
Query 462 AGCATTTGCCGAGACAGACAAAGATTTTCTCAA-GACAGTGACGAAGCAATGGCCTACGA 520
||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 360 AGCATTTGCAGAGACAGACAAAGATTTTCTCAACG-CAGTGAAGAAGCAATGGCCTACGA 418
Query 521 ACCCACAGATGGCATCAGTGGGGTCATGTTGCTTGGCAGGAGTGATATGCAACGGATTGG 580
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 ACCCACAGATGGCATCAGTTGGGTCCTGTTGCTTGGCAGGAGTGATATGCAACGGATTGG 478
Query 581 TGTATATTGCAAACACGGGAGATTCCAGAGCTGTGTTGGGCAGATCTGAGAGAGGTGGAG 640
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTATATTGCAAACGCGGGAGATTCCAGAGCTGTGTTGGGCAGATCTGAGAGAGGTGGAG 538
Query 641 TGAGAGCTGTTCAGTTATCTGTAGAGCACAATGCCAATCTTGAGTCTGCGAGGCAAGAGC 700
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 TGAGAGCTGTTCAGTTATCTGTAGAGCACAATGCCAATCTAGAGTCTGCGAGGCAAGAGC 598
Query 701 TATGGTCATTGCATCCTAATGACCCCACCATTCTTGTGATGAAGCACCGCTTGTGGCGTG 760
|||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |
Sbjct 599 TATGGTCAATGCATCCTAATGACCCTAATATTCTTGTGATGAAGCACCGCATGTGGCGAG 658
Query 761 TGAAAGGCGTTATCCAGGTCACAAGATCCATAGGTGATGCATACCTCAAAAGAGCAGAGT 820
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAAAGGCGTCATCCAGGTCACAAGATCCATAGGTGATGCATACCTCAAAAGAGCAGAGT 718
Query 821 TCAACAGAGAACCTTTGCTGCCCAAATTCAGACTACCAGAACATTTCACTAAGCCAATCC 880
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAACAGAGAACCTTTGCTGCCCAAATTCAGACTACCAGAACATTTCACTAAGCCAATCC 778
Query 881 TTAGTGCGGATCCATCAGTCACCATTACGCGGCTTAGCCCACAAGATGAGTTTATAATTC 940
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 779 TTAGTGCTGATCCATCAGTCACCATTACCCGGCTTAGCCCACAAGACGAGTTTATGATTC 838
Query 941 TTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAACCAGGAAGCTGTTGATATTGTGCATA 1000
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 839 TTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAATCAGGAAGCTGTTGACATTGTACATA 898
Query 1001 ATTCCCCTCGACAAGGAATAGCAAGGAGACTACTTAAAGCTGCATTGAAGGAAGCAGCAA 1060
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTCCCCGCGCCAAGGAATAGCAAGGAGACTACTTAAAGCTGCATTGAAGGAAGCAGCAA 958
Query 1061 AGAAAAGAGAGATGAGATACTCAGACCTAACA-GAGATCCATCCTGGTGTAAGAAGGCAT 1119
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 959 AGAAAAGAGAGATGAGATACTCAGACCTA-CAAGAGATCCATCCTGGTGTAAGAAGGCAT 1017
Query 1120 TTCCACGACGATATAACCGTTATTGTGGTCTATCTCAACCCCCACCCGGTCAAAACCAAT 1179
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1018 TTCCACGACGATATAACCGTTATTGTGATCTATCTCAACCCCCAACCGGTCAAAACCAAT 1077
Query 1180 TCTTGGGCTTCACCTCTGTCAATTAGAGGGGGATACCCGATGCATTCAACATCATGAACA 1239
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1078 TCTTGGGCTTCTCCTCTGTCAATTAGAGGGGGGTACCCAATGCATTCAACATCATGAACA 1137
Query 1240 GATCTTACGGCAAAAAC 1256
|||||||| ||||||||
Sbjct 1138 GATCTTACAGCAAAAAC 1154
> Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1
Length=1647
Score = 147 bits (79), Expect = 3e-34
Identities = 87/91 (96%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1453 CGAAAGCGTTGCAACATATTGGAGTTTAGGCACAAAACAGTAGATAGCCAAGAAATGTGT 1512
|||||||||||||| |||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1647 CGAAAGCGTTGCAATATATTGGAGTTTAGGCACAAAACAATACATAGCCAAAAAATGTGT 1588
Query 1513 TGAAACTTAACATTACATTCCCTTTATAAAA 1543
|||||||||||||||||||||||||||||||
Sbjct 1587 TGAAACTTAACATTACATTCCCTTTATAAAA 1557
> Ahg497008 jgi|Araly1|497008|fgenesh2_kg.8__2824__AT5G66080.1
Length=1485
Score = 132 bits (71), Expect = 9e-30
Identities = 288/390 (74%), Gaps = 26/390 (7%)
Strand=Plus/Plus
Query 754 TGGCGTGTGAAAGGCGTTATCCAGGTCA-CAAGATCCATAGGTGATGCATACCTCAA-AA 811
|||||||| || ||| |||| ||||| | || |||||||||| || | || || || ||
Sbjct 796 TGGCGTGTTAAGGGCTTTATTCAGGT-ATCACGATCCATAGGAGACGTGTATCTTAAGAA 854
Query 812 GAGCAGAGTTCAACAGAGAACCTTTGCTGCCCAAA-TTCAGACTACCAGAACATTTCACT 870
||| ||||||||||| ||||||||| | | |||| | | |||| | || | | |
Sbjct 855 -AGCGGAGTTCAACAGGGAACCTTTG-TACACAAAGTACCGACTGCGGGAGCCCATGA-A 911
Query 871 AAG-CCAATCCTT-AGTGCGGATCCATCAG-TCACCATTACGCG-GCT-TAGCCCACAAG 925
||| || || ||| |||| ||| ||||| | | ||| | | | || | ||| | |
Sbjct 912 AAGACCCAT-CTTGAGTGGGGAACCATC-GATAACC-GTGCATGATCTCCA-ACCAGACG 967
Query 926 ATGAGTTTATAAT-TCTTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAACCAGGAAGCT 984
|| ||||| | || | |||| ||||| || |||| |||||| ||||||||||| || |||
Sbjct 968 ATCAGTTTCTGATAT-TTGCATCAGACGGACTTTTGGAGCAGCTTAGCAACCAAGAGGCT 1026
Query 985 GTTGATA-TTGTGCATAATTC-CCCTCGACAA-GGAATAGCAAGGAGACTACTTAAAGCT 1041
||||| | | || || || | ||| || || || ||||| |||||||| | ||||||
Sbjct 1027 GTTGA-AGTCGTTCAGAA-CCACCCAAGA-AACGGGATAGCGAGGAGACTGGTGAAAGCT 1083
Query 1042 GCATTGAAGGAAGCAGCAAAGAAAAGAGAGATGAGATACTCAGACCT-AACAGAGATCCA 1100
|| || |||| |||||||||||||||||||||||||||| || || |||| |||| |
Sbjct 1084 GCGCTGCAGGAGGCAGCAAAGAAAAGAGAGATGAGATACTTTGATCTCAACA-AGATTGA 1142
Query 1101 TCCTGGTGTAAGAAGGCATTTCCACGACGA 1130
|| || || |||||||||||||||||
Sbjct 1143 AAGAGGAGTCAGGAGGCATTTCCACGACGA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5