BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02770.1 Length=1707 Score E Sequences producing significant alignments: (Bits) Value Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1 2531 0.0 > Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1 Length=1647 Score = 2531 bits (1370), Expect = 0.0 Identities = 1562/1655 (94%), Gaps = 12/1655 (1%) Strand=Plus/Plus Query 57 AAGTGCGAATTTCGAACGGAGCTACGATTCCATGGCGACCAACGGAGAGAAGGTCACGGC 116 ||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct 1 AAGTGCGTATTTCGAACGGAGCTGCGATTCCATGGCGACCAACGGAAATAAGGTCACGGC 60 Query 117 TACGGTGGTGAATGGCGGAGGGCTATCTACTGGTGAAAACCCTAAGAAAATTGTAGACCT 176 |||||||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||| Sbjct 61 TACGGTGGAGAATGGCGGTGGGCTTTCTACTGGTGAAAACCCTAAGAAAATCGTAGACCT 120 Query 177 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTCAAGGGATTTTC 236 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 121 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTTAAGGGATTTAC 180 Query 237 AGATTCTGGTGAAAAGAAGGAAGAAACCGACTCTAATGGTATTGGATCGACGGCTGGTGT 296 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 181 AGATTCTGGTGAAAAGAAGGACGAAACTGACTCTAATGGTATTGGATCGACGGCTGGTGT 240 Query 297 TGATTCTGGGGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 356 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGATTCTGGTGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 300 Query 357 GTTTGGTGTTTCGGTGAAATTGACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 416 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 301 GTTTGGTGTTTCGGTGAAACTAACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 360 Query 417 TGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 476 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 420 Query 477 GAAGCGAAAAGCAAGAGCTGATAGATTTGGGGTTCCTTCTGCGACCTCTACTACTGATAA 536 ||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 421 GAAGCGAAAGGCTAGAGCTGATAGATTTGGGGTTCCTGCTGCGACCTCTACTACTGATAA 480 Query 537 GACTGAGGAAGAGGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGAAAAGAGACTAAAGT 596 ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 481 CACTGAGGAAGAAGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGGAAAGAGACTAAAGT 540 Query 597 TGATTCTGCTGAAGAAAATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGAGGCTTC 656 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 TGATTCTGCTGAAGAAGATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGGGGCTTC 600 Query 657 AGCAGATGCATCTTCAGATTTACCTGAGAAGCAAATTATTGGCAAGGAGGCAGCTGTATC 716 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 601 AGCAGATGCATCTTCAGATTTACCTGGGAAGCAAAATATTGGCAAGGAGGCAGCTGTATC 660 Query 717 AGGAAGCGCTGCCTAAGGTTCCTCAATAAAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 776 ||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 661 AGGAAACGCTGCCTGAGGTTCCTCAAT-AAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 719 Query 777 CTAGCGTTTTATGAGTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 836 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTAGCGTTTTATGATTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 779 Query 837 TCCATGTGTGTAGTATCTTTACTAAGTTCGGTCG-TGGAGCAATCACCAGATGAGATCTT 895 ||| |||||||||||||||| ||||||||| | | ||| ||||||||||||||||| Sbjct 780 TCCCCGTGTGTAGTATCTTTATTAAGTTCGGAAGAT-AAGCTGTCACCAGATGAGATCTT 838 Query 896 GAGAAACCAATAAGTAACCTATAGTTCTGATTGTCTGAAATGACAATTATCAATGTGTTT 955 | |||||||||||||||||||||||| ||||||||| ||||| | |||||||| ||| || Sbjct 839 GGGAAACCAATAAGTAACCTATAGTTTTGATTGTCTTAAATGGCGATTATCAAAGTG-TT 897 Query 956 AGGACCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGGAG 1015 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 898 AGGATCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGAAG 957 Query 1016 TGGTAAGTATAGTTTGATTAATAACTTTATTTCGTTTTAATATATTGGAATGTGGATGGT 1075 |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||| Sbjct 958 TGGTAAGTATAGCTTGAGTAATACCTTTATTTCGTTTTAATATATGGGAATGTGGATGGT 1017 Query 1076 CCTTTTAGTATTGCATGTTCGTATCAAGCACAAGCACCAGCAATTGAAAATTTGTACTGC 1135 || ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| Sbjct 1018 CC-TTTAGTATTGCATGTTCGTATCAAGCACAGGCAGCAGCAATCGAAAATTTGTACTGC 1076 Query 1136 ATGCAGCAAATATTTAAGTAAGGGAGACAtttttttACTGTTTTGAA--CTAGTTAGAAA 1193 |||||||||||||||||| ||| || | | ||| |||||||||| ||||||||||| Sbjct 1077 ATGCAGCAAATATTTAAGGAAGAGATA-AAAAATTTGCTGTTTTGAAGGCTAGTTAGAAA 1135 Query 1194 TTAGAAGTGTTGATTACTTTTGAGTTGTGCCTATTTTGCTAGTTTTTCTTAGTCTTGGTT 1253 | ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1136 TAAGAAGTGTTGATTACTTTTGAATTGTGCCTATTTTGCTAGTTTTTCTTAGTCATGGTT 1195 Query 1254 ACGAAATTTAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1313 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 ACGAAATTAAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1255 Query 1314 GATCCCATAAACATGTGTCGTTCTTAGGTTACTTAATTTCATATGACCTCTCAAGCCGCT 1373 ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||| Sbjct 1256 GATCCCATAAACATGTGTCGTTCTTTGGTTACTTATTTTCATATGACCTCTCATGCCGCT 1315 Query 1374 ACTTCAGAATTTCTTTGTCATGTAAGACATCATTAGAACTATAGATGTACTTGTTGGTTT 1433 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1316 ACTTCAGAATTTCTTTGTCATGTACGACATCATTAGAACTATAGAGGTACTTGTTGGTTT 1375 Query 1434 CCATATCTCTGGTCTCTATGGCAGTTGAAGGAAAGAGAGCCTCAGATTCTAAATTCTCTG 1493 | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1376 CTATATCTCTGGTCTCTATGGCAGCTGAAGGAAAGAGAGCCTCAGATTCTAAA-TCTCTG 1434 Query 1494 TTCGTGGGACTGCGTTTTTGCTGGC-TTCTGATGCTACACAGTTTCTTTGTTTCTGTAAT 1552 |||||||||||| | ||| ||||| ||||||||||||||| |||||||||||||||||| Sbjct 1435 TTCGTGGGACTGGGACTTTACTGGCTTTCTGATGCTACACAATTTCTTTGTTTCTGTAAT 1494 Query 1553 AGATTTTAGATAAACTTTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1612 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 AGATTTTAGAT--ACTCTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1552 Query 1613 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTCTTGGCTATCTACTGTT 1672 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 1553 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTTTTGGCTATGTATTGTT 1612 Query 1673 TTGTGCCTAAACTCCAATATGTTGCAACGCTTTCG 1707 |||||||||||||||||||| |||||||||||||| Sbjct 1613 TTGTGCCTAAACTCCAATATATTGCAACGCTTTCG 1647 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64029701845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5