BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02770.1
Length=1707
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1 2531 0.0
> Ahg487051 jgi|Araly1|487051|fgenesh2_kg.6__185__AT5G02770.1
Length=1647
Score = 2531 bits (1370), Expect = 0.0
Identities = 1562/1655 (94%), Gaps = 12/1655 (1%)
Strand=Plus/Plus
Query 57 AAGTGCGAATTTCGAACGGAGCTACGATTCCATGGCGACCAACGGAGAGAAGGTCACGGC 116
||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 1 AAGTGCGTATTTCGAACGGAGCTGCGATTCCATGGCGACCAACGGAAATAAGGTCACGGC 60
Query 117 TACGGTGGTGAATGGCGGAGGGCTATCTACTGGTGAAAACCCTAAGAAAATTGTAGACCT 176
|||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 61 TACGGTGGAGAATGGCGGTGGGCTTTCTACTGGTGAAAACCCTAAGAAAATCGTAGACCT 120
Query 177 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTCAAGGGATTTTC 236
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 121 CAACACTACGGAGTTAGATCGTACTGACGACATTCTCGACGGAGAAGTTAAGGGATTTAC 180
Query 237 AGATTCTGGTGAAAAGAAGGAAGAAACCGACTCTAATGGTATTGGATCGACGGCTGGTGT 296
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 181 AGATTCTGGTGAAAAGAAGGACGAAACTGACTCTAATGGTATTGGATCGACGGCTGGTGT 240
Query 297 TGATTCTGGGGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 356
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGATTCTGGTGATATCTCTCCGGTCGATGATATCCAGAAGAAGATTCGACGTGCTGAGAG 300
Query 357 GTTTGGTGTTTCGGTGAAATTGACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 416
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTTGGTGTTTCGGTGAAACTAACCGAAGAGGAGAAGCGCAATTCTCGTGCTGAGAGGTT 360
Query 417 TGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGTACTGTAGCTGCAGCAGTGGTGAATGGCTCAGAGGGAACGAAGAAAGCAGAGGAATT 420
Query 477 GAAGCGAAAAGCAAGAGCTGATAGATTTGGGGTTCCTTCTGCGACCTCTACTACTGATAA 536
||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 GAAGCGAAAGGCTAGAGCTGATAGATTTGGGGTTCCTGCTGCGACCTCTACTACTGATAA 480
Query 537 GACTGAGGAAGAGGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGAAAAGAGACTAAAGT 596
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 CACTGAGGAAGAAGCAAAGAAGAAAGCTAGGCTCGCTCGTTTTGGGAAAGAGACTAAAGT 540
Query 597 TGATTCTGCTGAAGAAAATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGAGGCTTC 656
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TGATTCTGCTGAAGAAGATAAGCGCAAAGCTAGAGCATTGAGGTTTTCAAAAGGGGCTTC 600
Query 657 AGCAGATGCATCTTCAGATTTACCTGAGAAGCAAATTATTGGCAAGGAGGCAGCTGTATC 716
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 601 AGCAGATGCATCTTCAGATTTACCTGGGAAGCAAAATATTGGCAAGGAGGCAGCTGTATC 660
Query 717 AGGAAGCGCTGCCTAAGGTTCCTCAATAAAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 776
||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 661 AGGAAACGCTGCCTGAGGTTCCTCAAT-AAGTTTTTCCGTCTTTGTAGTTAGGTAGTGTG 719
Query 777 CTAGCGTTTTATGAGTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 836
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTAGCGTTTTATGATTCCCTCTCTGGCTGCTTCATTCTCTCTTTATTTCTGAATTAGAAG 779
Query 837 TCCATGTGTGTAGTATCTTTACTAAGTTCGGTCG-TGGAGCAATCACCAGATGAGATCTT 895
||| |||||||||||||||| ||||||||| | | ||| |||||||||||||||||
Sbjct 780 TCCCCGTGTGTAGTATCTTTATTAAGTTCGGAAGAT-AAGCTGTCACCAGATGAGATCTT 838
Query 896 GAGAAACCAATAAGTAACCTATAGTTCTGATTGTCTGAAATGACAATTATCAATGTGTTT 955
| |||||||||||||||||||||||| ||||||||| ||||| | |||||||| ||| ||
Sbjct 839 GGGAAACCAATAAGTAACCTATAGTTTTGATTGTCTTAAATGGCGATTATCAAAGTG-TT 897
Query 956 AGGACCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGGAG 1015
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 AGGATCTAGGAATTCTGAAGTGGCTGGTATTGATGTTTTCCATGTTGCAGGTTCTTGAAG 957
Query 1016 TGGTAAGTATAGTTTGATTAATAACTTTATTTCGTTTTAATATATTGGAATGTGGATGGT 1075
|||||||||||| |||| ||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 958 TGGTAAGTATAGCTTGAGTAATACCTTTATTTCGTTTTAATATATGGGAATGTGGATGGT 1017
Query 1076 CCTTTTAGTATTGCATGTTCGTATCAAGCACAAGCACCAGCAATTGAAAATTTGTACTGC 1135
|| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 1018 CC-TTTAGTATTGCATGTTCGTATCAAGCACAGGCAGCAGCAATCGAAAATTTGTACTGC 1076
Query 1136 ATGCAGCAAATATTTAAGTAAGGGAGACAtttttttACTGTTTTGAA--CTAGTTAGAAA 1193
|||||||||||||||||| ||| || | | ||| |||||||||| |||||||||||
Sbjct 1077 ATGCAGCAAATATTTAAGGAAGAGATA-AAAAATTTGCTGTTTTGAAGGCTAGTTAGAAA 1135
Query 1194 TTAGAAGTGTTGATTACTTTTGAGTTGTGCCTATTTTGCTAGTTTTTCTTAGTCTTGGTT 1253
| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1136 TAAGAAGTGTTGATTACTTTTGAATTGTGCCTATTTTGCTAGTTTTTCTTAGTCATGGTT 1195
Query 1254 ACGAAATTTAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1313
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ACGAAATTAAGCTGGTCTACTGGTGTTCTGTGCTTGATTGCGAATATTGCATGCAAAATG 1255
Query 1314 GATCCCATAAACATGTGTCGTTCTTAGGTTACTTAATTTCATATGACCTCTCAAGCCGCT 1373
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||
Sbjct 1256 GATCCCATAAACATGTGTCGTTCTTTGGTTACTTATTTTCATATGACCTCTCATGCCGCT 1315
Query 1374 ACTTCAGAATTTCTTTGTCATGTAAGACATCATTAGAACTATAGATGTACTTGTTGGTTT 1433
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1316 ACTTCAGAATTTCTTTGTCATGTACGACATCATTAGAACTATAGAGGTACTTGTTGGTTT 1375
Query 1434 CCATATCTCTGGTCTCTATGGCAGTTGAAGGAAAGAGAGCCTCAGATTCTAAATTCTCTG 1493
| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1376 CTATATCTCTGGTCTCTATGGCAGCTGAAGGAAAGAGAGCCTCAGATTCTAAA-TCTCTG 1434
Query 1494 TTCGTGGGACTGCGTTTTTGCTGGC-TTCTGATGCTACACAGTTTCTTTGTTTCTGTAAT 1552
|||||||||||| | ||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1435 TTCGTGGGACTGGGACTTTACTGGCTTTCTGATGCTACACAATTTCTTTGTTTCTGTAAT 1494
Query 1553 AGATTTTAGATAAACTTTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1612
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AGATTTTAGAT--ACTCTTGTTGATACTTGCTTTCTGTTAATTTTGAATGAAGCGCCAGA 1552
Query 1613 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTCTTGGCTATCTACTGTT 1672
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1553 AAACTTTTATAAAGGGAATGTAATGTTAAGTTTCAACACATTTTTTGGCTATGTATTGTT 1612
Query 1673 TTGTGCCTAAACTCCAATATGTTGCAACGCTTTCG 1707
|||||||||||||||||||| ||||||||||||||
Sbjct 1613 TTGTGCCTAAACTCCAATATATTGCAACGCTTTCG 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64029701845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5