BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02780.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487053 jgi|Araly1|487053|fgenesh2_kg.6__187__AT5G02780.1 1286 0.0
> Ahg487053 jgi|Araly1|487053|fgenesh2_kg.6__187__AT5G02780.1
Length=932
Score = 1286 bits (696), Expect = 0.0
Identities = 863/940 (92%), Gaps = 25/940 (3%)
Strand=Plus/Plus
Query 11 CATAGTTCCTTTAAAACATCATATCTGCAATAATAATCCCCTGAAGAAACAACTCTTAT- 69
|||||||||| |||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 1 CATAGTTCCTGCAAAACATCATCTCTGTAATAACAATCCCCTGAAGAAACAACTCTTATA 60
Query 70 CA--AATCCTCTCCATGGCTCTATCTCCTCCAAAAAT-TTTCGTAGAAGATCGTCAGGTT 126
| ||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 61 TATTAATCCTCTCCATGGCTCTATCTCCT-CAAAAATGTTTCGTAGAAGATCGTCAAGTT 119
Query 127 CCGCTCGATGCTACCTCTGATCCACCTGCTCTGTTCGACGGAACCACAAGGTTGTACATA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCGCTCGATGCTACCTCTGATCCACCTGCTCTGTTCGACGGAACCACAAGGTTGTACATA 179
Query 187 AGCTACACTTGCCCATTTGCACAACGTGTTTGGATTACAAGAAACCTCAAGGGTCTGCAA 246
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 AGCTACACCTGCCCATTTGCACAACGTGTTTGGATTACCAGAAACCTCAAGGGTCTGCAA 239
Query 247 GATGAGATCAAATTGGTTCCTATAGATCTTCCTAATAGGCCAGCTTGGTTAAAGGAGAAA 306
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GAGGAGATCAAATTGGTTCCTATAGACCTTCCTAATAGGCCAGCTTGGTTAAAGGAGAAA 299
Query 307 GTTAATCCTGCAAACAAGGTTCCTGCCCTTGAACACAATGGAAAAATCACTGGGGAGAGT 366
|||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||
Sbjct 300 GTTAATCCTGCAAACAAGGTTCCTGCCCTTGAACACAATGAAAAAATCATTGCGGAAAGT 359
Query 367 CTTGATCTAATCAAATATGTCGATAGCAATTTTGATGGACCTTCACTTTACCCTGAGGAT 426
|||||| |||||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct 360 CTTGATTTAATCAAATATGTCGATATCAATTTCGATGGGCCTTCACTTTACCCCGAGGAT 419
Query 427 TCTGCAAAGAGAGAGTTTGGTGAAGAACT-GTTGAAATATGTCGATGAAACATTTGTAAA 485
|||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||
Sbjct 420 TCTGCAAAGAGAGAGTTTGGTGAAGA-CTTGTTGAAATATGTTGATGCAACATTTGTAAA 478
Query 486 AACTGTGTTTGGCTCTTTCAAAGGTGACCCGGTTAAAGAAACAGCATCAGCCTTCGATCA 545
||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||
Sbjct 479 AACCGTGTTTGGCTCTTTTAAAGGTGACCCGGTTAAAGAAACAGCATCGGTCTTCGATCA 538
Query 546 CGTGGAAAATGCTCTGAAAAAGTTTGATGATGGTCCTTTCTTCCTTGGCGAGCTTAGTTT 605
||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 539 CGTGGAAAATGCTTTGAAGAAGTTTGATGATGGTCCTTTCTTCCTCGGCGATCTTAGTTT 598
Query 606 GGTTGATATTGCATATATCCCATTTATCGAACGCTTTCAAGTCTTCCTCGACGAAGTTTT 665
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 GGTTGATATCGCATATATCCCATTTATCGAACGATTTCAAGTCTTCCTCGACGAAGTTTT 658
Query 666 TAAATATGAAATTATAATCGGACGGCCAAATCTAGCTGCTTGGATTGAGCAA-ATGAACA 724
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct 659 TAAATATGAAATTATAATCGGACGTCCAAATCTAGCTGCTTGGATTGAG-AACATGAACA 717
Query 725 AGATGGTTGCATATACGCAGACCAAAACCGACTCCGAATATGTTGTCAATTACTTCAAGA 784
|||||||||||||||||||||| ||||||||||| || ||| | |||||||| || ||||
Sbjct 718 AGATGGTTGCATATACGCAGACAAAAACCGACTCAGACTATATCGTCAATTATTTTAAGA 777
Query 785 -GATTCATGTAAAAGTAACAAATCTGTTGGACT---T--T-GGTAACGATGCCATGATGG 837
| ||||||||||| |||||||||||||||||| | | |||| |||||||| | ||
Sbjct 778 AG-TTCATGTAAAAATAACAAATCTGTTGGACTCAGTCGTTGGTATCGATGCCAACAGGG 836
Query 838 CTTATGAAGAAGAAATATTACTACT--T-GAGAGTGTTATAAATTT-CTGGATTTGGTAT 893
|||| |||||||||| || |||||| | |||||||||||||| || |||||||||||||
Sbjct 837 CTTACGAAGAAGAAAGATGACTACTGCTTGAGAGTGTTATAAAATTACTGGATTTGGTAT 896
Query 894 TGTACATTTTGTGATAAATAAGAGATATTTGGTATTGTTT 933
|||| ||| || ||||||||| | ||||||||||||||
Sbjct 897 TGTAG-TTT-GT--TAAATAAGAAAAATTTGGTATTGTTT 932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5