BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02820.1
Length=1655
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487058 jgi|Araly1|487058|fgenesh2_kg.6__192__AT5G02820.1 2335 0.0
> Ahg487058 jgi|Araly1|487058|fgenesh2_kg.6__192__AT5G02820.1
Length=1604
Score = 2335 bits (1264), Expect = 0.0
Identities = 1418/1493 (95%), Gaps = 7/1493 (0%)
Strand=Plus/Plus
Query 1 CATTCACGAGATACGTTGACCT-AAAGGGTAAATTTTCCCGCCATTGTTAGTACCAGAAC 59
|||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||
Sbjct 1 CATTCACGAGATACGTTGACCTAAAAGAGTAAATTTTCCCGCCACCGTTAGTACCAGAAC 60
Query 60 TCTCTGGGCCGCCGCGTCTCCGTCGTCGTGGCTATCTACAGATGGCGGATAAGAAGAAGC 119
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 61 TCTCTGGGCCGCCGCGTCTCCGTCGTCGTCGCTGTCTACAGATGGCGGATAAGAAGAAGC 120
Query 120 GAAAGCGATCAAAAGATGACGAGGCGGAGGAACTTCCTTTCAAAAGCATTCTGGAATCAG 179
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAAGCGATCTAAAGATGACGAGGCGGAGGAACTTCCTTTCAAAAGCATTCTGGAATCAG 180
Query 180 ACGACGTTATCACGGAGCTTCTCAAATCGTATATTTCCTCTTCTATCAAAGCCGCCGCCG 239
| || |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 181 ATGAAATTATCACGGAGCTTCTCAAATCATATATCTCCTCTTCTATCAAAGCCGCCGCCG 240
Query 240 GAGCCGGCGGTGCCTCCTCCTCTTCATCGAAACCTCTAACCCTAGCTGACCTCTCTCTAT 299
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 241 GAGCTGGCGGTGCCTCCTCCTCTTCATCGAAACCACTAACCCTAGCTGACCTCTCTCTCT 300
Query 300 CATCTTCCTGTCGTGAAGTCGCAGATCTCTCACTCTCCTCCGTGCAGACAGAGATAGAGA 359
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CATCTTCCTGCCGTGAAGTCGCAGATCTCTCACTCTCCTCCGTGCAGACAGAGATAGAGA 360
Query 360 CAGTCATCGTCCAGATCGCCCGTTCTATTCTCGCCGGTGATGGCTTCTCCTTCAGTGTTC 419
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 361 CAGTCATCGTCCAGATCGCCCGTTCCATTCTCGCCGGCGATGGCTTTTCCTTCAGTGTTC 420
Query 420 CTTCACGCGCCGCCTCGAATCAGCTGTATGTTCCTGAGCTCGACCGTATAGTGCTAAAAG 479
||||||||||||||||||||||||||||||| || |||||||||||||| ||| ||||||
Sbjct 421 CTTCACGCGCCGCCTCGAATCAGCTGTATGTCCCGGAGCTCGACCGTATTGTGTTAAAAG 480
Query 480 ACAAATCTACCCTCCGTCCATTTGCCTCCGTTTCTTCTGTCAGGAAAACCACCATCACCA 539
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAAATCCACCCTCCGGCCATTTGCCTCCGTTTCTTCTGTCAGGAAAACCACCATCACCA 540
Query 540 CTCGTATCCTCGCCCTTATCCACCAACTCTGCCTCAGGAACATTCACGTTACTAAGCGTG 599
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 541 CTCGTATCCTTGCCCTTATCCACCAACTCTGCCTCAGGAACATTCATGTCACTAAGCGTG 600
Query 600 ATCTCTTCTACACCGACGTTAAGCTTTTCCAGGACCAGACACAGAGTGATGCTGTGTTGG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATCTCTTCTACACCGACGTTAAGCTTTTCCAGGACCAGACACAGAGTGATGCTGTGTTGG 660
Query 660 ATGATGTCTCATGTATGCTCGGTTGCACAAGGTCAAGTCTCAATGTCATTGCAGCAGAGA 719
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 661 ATGATGTCTCATGTATGCTCGGTTGCACAAGGTCAAGCCTCAATGTAATTGCAGCAGAGA 720
Query 720 AAGGTGTGGTGGTGGGAAGGCTTATATTCAGTGACAATGGAGACATGATAGATTGCACAA 779
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 721 AAGGAGTGGTGGTGGGAAGGCTCATATTCAGTGACAATGGAGATATGATAGATTGCACAA 780
Query 780 AGATGGGAATGGGTGGGAAAGCCATTCCACCAAACATTGACCGGGTTGGAGATATGCAGA 839
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 AGATGGGGATGGGTGGGAAAGCCATTCCACCAAACATCGACCGGGTTGGAGATATGCAGA 840
Query 840 GTGATGCTATGTTCATACTCTTAGTTGAAAAAGATGCAGCTTATATGAGGTTAGCTGAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGATGCTATGTTCATACTCTTAGTTGAAAAAGATGCAGCTTATATGAGGTTAGCTGAAG 900
Query 900 ACAGATTCTATAACCGGTTCCCTTGTATCATCGTGACTGCAAAAGGCCAGCCTGATGTAG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 ACAGATTCTATAACCGGTTCCCTTGTATCATCGTGACTGCAAAAGGCCAGCCCGATGTAG 960
Query 960 CTACAAGGCTCTTCTTGAGGAAAATGAAAATGGAGCTTAAGCTTCCGGTACTTGCCTTGG 1019
|||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 961 CTACAAGGCTGTTCTTGAGGAAAATGAAAATGGAGCTTAAGCTTCCAGTGCTTGCCTTGG 1020
Query 1020 TGGATAGTGATCCTTACGGATTGAAGATCTTGTCGGTGTATGGATGTGGGTCGAAGAACA 1079
||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 1021 TGGATAGTGATCCTTACGGGTTGAAGATCTTGTCAGTATATGGATGTGGGTCGAAGAATA 1080
Query 1080 TGTCATATGATAGTGCAAACTTGACTACGCCTGATATTAAGTGGCTTGGAATTAGGCCGA 1139
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||||| |
Sbjct 1081 TGTCTTATGATAGTGCAAATTTGACTACACCTGATATTAAGTGGCTTGGAATCAGGCCCA 1140
Query 1140 GTGATTTGGACAAGTATAAGATACCTGAACAGTGTAGGTTGCCGATGACTGAGCAGGATA 1199
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1141 GTGATTTGGACAAGTATAAGATACCTGAACAGTGTAGGCTGCCAATGACTGAGCAGGATA 1200
Query 1200 TTAAGACCGGGAAGGATATGCTAGAGGAGGATTTCGTGAAGAAAAATCCC-GGGTGGGTC 1258
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1201 TTAAGACCGGGAAGGATATGCTAGAGGAGGATTTCGTGAAGAAAAA-CCCTGGGTGGGTT 1259
Query 1259 GAGGAACTTAACCTGATGGTGAAAACGAAGCAAAAGGCTGAGATTCAGGCGTTGAGCTCT 1318
|| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1260 GAAGAACTTAACCTGATGGTGAAAACAAAGCAGAAGGCTGAGATTCAGGCGTTGAGCTCT 1319
Query 1319 TTTGGTTTCCAGTATTTATCGGAAGTTTACTTGCCCCTGAAACTGCAGCAGCAGGATTGG 1378
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTTGGTTTCCAGTATTTATCAGAGGTTTACTTGCCCCTGAAACTGCAGCAGCAGGATTGG 1379
Query 1379 CTCTGATAATCAGGTT--T--CTTCCTGATCAATTAGATAGACCAACAAGTGTACTCTAC 1434
||||||| |||||||| | ||||||| ||||||||| | ||||||||||| || ||||
Sbjct 1380 CTCTGATCATCAGGTTGCTGTCTTCCTGTTCAATTAGAGACACCAACAAGTGCACACTAC 1439
Query 1435 AAATTTCGAATTTTTGATAATGCAATTGCCTGTTTCTTAGCATGTGAATTATT 1487
| ||||||| ||| |||||||| |||||| |||||| |||||||||||| |||
Sbjct 1440 AGATTTCGAGTTTCTGATAATGTAATTGCTTGTTTCCTAGCATGTGAATAATT 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62049009105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5