BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02830.1
Length=2783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932895 jgi|Araly1|932895|scaffold_400883.1 819 0.0
> Ahg932895 jgi|Araly1|932895|scaffold_400883.1
Length=675
Score = 819 bits (443), Expect = 0.0
Identities = 518/554 (94%), Gaps = 6/554 (1%)
Strand=Plus/Plus
Query 75 CTCCTCCGCCATAACCAATCCTCACCATCACCACCGTCGCTGTTACGCCACAGCACCAGA 134
||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 CTCCTCCTCCATAACCAATCCTCACCACCACCACCGTCGCTGTTACGCCACCGCACCAGA 180
Query 135 GTCCAACCGGAAAA-CTAAATCCAATTCTTCTTTCACCAAGCTACTTCCGTCACTACCGC 193
| |||||| ||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 181 GCCCAACC-GAAAAGCTAAATCCAATTCTTCTCTCACCAAGCTACTCCCGTCACTACCGC 239
Query 194 AGCAACATTCACCTTCTCCTGCTTCAGTCTCCGCGACTCATTCTCTCTCTAGCCACTTCT 253
||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 240 AGCAACACTCACCTTCTCCTGCTCCAGTCTCCGCGACTCATTCTCTCTCTAATCACTTCT 299
Query 254 CCAATGTCGTAAGATGGATTCCAGATGGCTCGCTT-GAGTATTACGCTGATTTTGCCTCG 312
| || |||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 300 CTAACATCGTAAGATGGATTCCAGATGGCTCG-TTGGAGTATTACGCTGATTTCGCCTCG 358
Query 313 AAGCTAGCTGAGGATGGTCGAATTGAGGACGTCGCTCTCATCGCCGAGACTTTGGCTGCA 372
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 359 AAGCTCGCTGAGGATGGCCGAATTGAGGACGTCGCTCTCATCGCCGAGACCTTGGCTGCA 418
Query 373 GAGTCCGGAGCTAATGTGGCTCGTTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 432
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGTCCGGAGCTAATGTGGCACGCTTCGCTTCCATGGTTGATTATGATCTCTTATCGAAA 478
Query 433 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTCGTTTACACTTTGAAGAGA 492
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 GGGATTTCGTCGAATCTTCGACAAGGTAAGATTGAGAGCGTTGTTTACACTTTGAAGAGA 538
Query 493 ATTGAGAAGGTAGGAATTGCTCCATTGGACCTTGTCGATGATTCGTCTGTGAAATTAATG 552
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 539 ATTGAGAAGGTAGGGATTGCTCCATTGGACCTCGTCGATGAAACGTCTGTGAAACTAATG 598
Query 553 AGGAAACAGTTTCGAGCAATGGCTAACTCTGTGCAAGTGGAGAAAGCTATTGATCTAATG 612
||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 599 AGGAAACAGTT-CGTTCAATGGCTAACTCTTTGCAAGTGGAGAAAGCTATTGACCTAATG 657
Query 613 GAGATACTTGCCGG 626
|| || ||||||||
Sbjct 658 GA-ATTCTTGCCGG 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105014805465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5