BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02840.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163 835 0.0
Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1 582 2e-165
> Ahg324943 jgi|Araly1|324943|fgenesh1_pm.C_scaffold_6000163
Length=930
Score = 835 bits (452), Expect = 0.0
Identities = 498/520 (96%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 91 ATGACCTCAACCAATCCGGTGGTCGCCGAAGTAATACCGGCGGA-AACTTCTACAGATGC 149
||||| |||| |||||||||||||||||||||| ||||| |||| || || |||||||||
Sbjct 1 ATGACTTCAAGCAATCCGGTGGTCGCCGAAGTAGTACCGTCGGAGAA-TTGTACAGATGC 59
Query 150 TACAGAGACGACGATTGCAACGACGGAAGCTGGTGAAGCACCGGAGAAGAAGGTGAGGAA 209
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 60 TACAGAGACGACGATGGCAACGACGGAAGCTGGGGAAGCACCGGAGAAGAAGGTGAGGAA 119
Query 210 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGAGAACACGACAAGTTTCT 269
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 120 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGCGAACACGATAAGTTTCT 179
Query 270 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 239
Query 330 GACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCaaaaaaaTGG 389
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GACAGTCATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAGAAAAATGG 299
Query 390 GACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 449
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GACTTTAGCACATGTGCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 359
Query 450 AAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTCCTTTCCTACTCAAAT 509
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AAAGGCATCGAAGAATGCTCAAATGTCGCTACACGTTTCCATGTCCTTTCCTACTCAAAT 419
Query 510 AAATAACCTGCCTGGATATACTCCATGGGATGATGATACATCTGCATTGTTAAACATTGC 569
|||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||
Sbjct 420 AAATAACCTGCCTGGATATACTTCATGGGATGATGATACCTCTGCATTGCTAAACATAGC 479
Query 570 TGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACT 609
||||||||||||||||||||||||||||||||||| |||
Sbjct 480 CGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGA-ACT 518
Score = 577 bits (312), Expect = 9e-164
Identities = 336/348 (97%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 625 GTTGATGTTGGATCAAATGACATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATCGGA 684
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 583 GTTGTTGTTGGATCAAATGGCATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATTGGA 642
Query 685 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTGAGACTGGCGAAACAAGCTCCCTCA 744
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 643 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTAAGAGTGGTGAAACAAGCTCCCTCA 702
Query 745 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTGTTCGATCCT 804
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 703 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCT 762
Query 805 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTT 864
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 763 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTT 822
Query 865 TTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTTGAACCTACTTCT 924
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 823 CTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAACCTGCTTCT 882
Query 925 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTAAGCTCTTAG 972
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 883 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTGAGCTCTTAG 930
> Ahg478281 jgi|Araly1|478281|fgenesh2_kg.3__982__AT3G09600.1
Length=1341
Score = 582 bits (315), Expect = 2e-165
Identities = 600/733 (82%), Gaps = 38/733 (5%)
Strand=Plus/Plus
Query 196 AAGAAGGTGAGGAAAGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGG-AGA 254
||||| ||||||||| |||| || |||||||||||||| || || ||||| | ||| |||
Sbjct 107 AAGAAAGTGAGGAAACCTTATACCATCACCAAGTCTAGGGAAAGCTGGACAG-AGGAAGA 165
Query 255 ACACGACAAGTTTCTGGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGA 314
|| || |||||||| ||||| |||||| |||||||||| |||||||| ||||| |||||
Sbjct 166 GCATGATAAGTTTCTTGAAGCACTTCAACTGTTTGATCGAGACTGGAAGAAGATTGAAGA 225
Query 315 TTTTGTTGGTTCAAAGACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAA 374
|||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||
Sbjct 226 TTTTGTTGGTTCAAAGACTGTGATTCAGATAAGGAGTCACGCCCAAAAATACTTTCTAAA 285
Query 375 GGTCCaaaaaaaTGGGACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGC 434
||| || ||||| ||||| ||||||||||| ||||| ||| |||||||||||||||| ||
Sbjct 286 GGTTCAGAAAAACGGGACATTAGCACATGTGCCACCTCCTCGGCCTAAGCGCAAAGCAGC 345
Query 435 TCATCCATATCCTCAAAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTC 494
|||||| |||||||||||||||||||| || ||||||||| | ||||| ||||||| |||
Sbjct 346 TCATCCGTATCCTCAAAAGGCATCGAAGAACGCTCAAATGCCACTTCAAGTTTCCACGTC 405
Query 495 CTTTCCTAC-T--C-AAATAAATAACCTGCCTGGATATACTCCATGGGATGATGATACAT 550
||| |||| | | |||| | || |||| |||| | || |||||||||||| |
Sbjct 406 TTTTACTACTTCGCGAAAT-AGCGACATGCCGGGATTTGCTTCATGGGATGATG---C-- 459
Query 551 CTGCATTGTTAAACATTGCTGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACTC 610
|| || || | ||| ||| | |||||| ||||| || ||||||||| |||||
Sbjct 460 CT-CAATG-----C--TGC--TAAACAGAGTTATTTCACCACAACATGAACTTGCTACTC 509
Query 611 TTTGTGGAGCAGAAGTTGATGTTGGATCAAATGACATGA-TAAGTGAAACTAGTCCTTC- 668
|| |||||||||||| |||| |||||||||| | | | | ||| || | ||| |||||
Sbjct 510 TTCGTGGAGCAGAAGCTGATATTGGATCAAAGGGC-TTATTAAATGTTAGTAGCCCTTCT 568
Query 669 AGCATCTGGTATCGGAAGCTCAAGCAGAACACTATCAGATTCTAAGGGTT-TGAGACTGG 727
| ||||| |||| |||||||||||| ||||| |||||| |||| | | || | | | ||
Sbjct 569 A-CATCTTGTATGGGAAGCTCAAGCCGAACAGTATCAGGTTCTGA-GATTGTAAAAAAGG 626
Query 728 CGAAACAAGC-TCCC--TCAATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCA 784
|||||| ||| |||| || | || ||| |||||||||||||||| |||||||||||||
Sbjct 627 CGAAAC-AGCTTCCCGTTC--TTCACGGTGTTCCTGATTTTGCTGAAGTTTATAACTTCA 683
Query 785 TTGGGAGTGTGTTCGATCCTGACAGC-AAAGGCCGCATGAAAAAGCTCAAGGAAATGGAT 843
|||||||||| || |||||||| | | | ||||| | || ||||||||||||||||||||
Sbjct 684 TTGGGAGTGTCTTTGATCCTGA-AACGAGAGGCCACGTGGAAAAGCTCAAGGAAATGGAT 742
Query 844 CCTATAAATTTCGAAACTGTTTTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAAC 903
||||||||||| ||||||||| || | |||||||||||||||||||| ||||| ||||||
Sbjct 743 CCTATAAATTTTGAAACTGTTCTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAAC 802
Query 904 CCTGACTTT-GAA 915
||||| ||| |||
Sbjct 803 CCTGA-TTTAGAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5