BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02870.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487065 jgi|Araly1|487065|fgenesh2_kg.6__199__AT5G02870.1 2233 0.0
Ahg478282 jgi|Araly1|478282|fgenesh2_kg.3__983__AT3G09630.2 1373 0.0
Ahg320281 jgi|Araly1|320281|fgenesh1_pm.C_scaffold_4000338 292 4e-78
Ahg314007 jgi|Araly1|314007|fgenesh1_pm.C_scaffold_1002787 132 9e-30
> Ahg487065 jgi|Araly1|487065|fgenesh2_kg.6__199__AT5G02870.1
Length=1457
Score = 2233 bits (1209), Expect = 0.0
Identities = 1367/1443 (95%), Gaps = 11/1443 (1%)
Strand=Plus/Plus
Query 1 ACAGCCTCACTTC-CAAACCCTTCGTTTACAG-CAAAAAATCGAAAATGGTTGCCTCAGC 58
|||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1 ACAGCCTCAC-TCACAAACCCTTCGTTTCCAGCCAAAAAATCGAAAATGGTTGCCTCAGC 59
Query 59 CGCCGCACGACCTCTTGTCACCGTCCAAGGACTTGACGGTGACATGAGCACCGATCAATC 118
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 CGCCGCACGACCTCTCGTCACCGTCCAAGGCCTTGACGGTGACATGAGCACCGATCAATC 119
Query 119 CACCACCGTCACTTTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTGTCAACTT 178
|||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 120 CACCACCGTCACTTTACCTGACGTCATGACTGCTCCCGTTCGTCCAGACATCGTCAACTT 179
Query 179 CGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAAAAGGCCGG 238
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 180 CGTCCACGCCCAAATCTCCAACAATAGCCGTCAGCCTTACGCAGTCTCCAAAAAAGCCGG 239
Query 239 TCACCAAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATCCCTCGTGT 298
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 240 TCACCAAACCTCTGCCGAGTCATGGGGAACCGGAAGAGCCGTGTCTCGTATCCCTCGTGT 299
Query 299 TCCTGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGTCGTGGTGG 358
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 TCCCGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGTAACATGTGTCGTGGTGG 359
Query 359 TCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTCAACAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAATGTCAACAT 419
Query 419 GAAGAGGCACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTTGTGATGGC 478
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GAAGAGACACGCGATTGTTTCTGCAATCGCCGCTACTGCTGTTCCAGCTCTTGTGATGGC 479
Query 479 TCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGCGACTCAGCTGA 538
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 480 TCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGTGATTCAGCTGA 539
Query 539 AGCTGTGGAGAAGACATCAGCTGCGATCAAGGTATTGAAGCAGATCGGTGCTTACGACGA 598
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 AGCTGTGGAGAAGACATCAGCTGCGATCAAGGTTTTGAAGCAGATCGGTGCTTACGACGA 599
Query 599 TGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGGAATCG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 TGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATGAGGAACCG 659
Query 659 TCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTTTGGAACTGAAGGAGCCAAGATTGT 718
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 TCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTATGGAACTGAAGGAGCCAAGATTGT 719
Query 719 GAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCACGTTGAGAGGCTTAACTTGTT 778
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 720 TAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCATGTTGAGAGACTTAACTTGTT 779
Query 779 GAAATTAGCCCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCTGCTTTTGA 838
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GAAATTAGCTCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGTCAGCTTTTGA 839
Query 839 GAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCATCAGAGAAGAAGAAGGGTTACGT 898
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 840 TAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCGTCAGAGAAGAAGAAGGGTTATGT 899
Query 899 CTTGCCTCGTGCGAAGATGGTGAATGCTGATCTTGCTAGGATTATTAACTCCGATGAGGT 958
|||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 900 CTTGCCTCGTTCGAAGATGTTGAATGCTGATCTTGCCAGGATTATTAACTCCGATGAGGT 959
Query 959 ACAGAGTGTGGTGAACCCGATTAAGGATGGTTCC-AAGAGAGCGGTTCTGAAGAAGAATC 1017
||||||||||||||||||||||||| | || | | |||||||| ||||||||||||||||
Sbjct 960 ACAGAGTGTGGTGAACCCGATTAAGAA-GGATGCGAAGAGAGCTGTTCTGAAGAAGAATC 1018
Query 1018 CATTGAAGAACCTTAATGTGATGTTCAAGTTGAATCCTTATGCTAAGACCGCAAAGAGAA 1077
||||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||| |
Sbjct 1019 CATTGAAGAACTTTAATGTGATGCTCAAGTTGAATCCTTATGCTAAGACTGCTAAGAGGA 1078
Query 1078 TGTCTCTGTTGGCTGAAGCTTCAA-GGGTTAAGGCTAAGAAGGAGAAGCTCGAGAAGAAG 1136
|||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct 1079 TGTCTCTGTTGGCTGAAGCT-CAAAGGGTTAAGGCGAAGAAGGAGAAGCTCGAGAAGAAG 1137
Query 1137 AGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCTTGGTAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1138 AGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCAAGGCATGGTAC 1197
Query 1197 CAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGGCTTGGC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCAAGTGGCTTGGC 1257
Query 1257 GCTAGTCAGTAATGATGCTCTCGTCATCGCAAAGTCTCTTATATCTAGGCAAAGATTTTG 1316
||||||||||||||||||| || |||||||||| ||||| |||| |||||||||||||||
Sbjct 1258 GCTAGTCAGTAATGATGCTTTCATCATCGCAAATTCTCTCATATTTAGGCAAAGATTTTG 1317
Query 1317 GTTTTCTGATTTATGTTCTTCGTTTGT-ATTGGATTTATCTG-GGATTTTATGTTGTTGA 1374
||| || | |||||| |||| ||||| || ||||||||||| || | |||||||||||
Sbjct 1318 GTTATCCGTTTTATGATCTTTATTTGTTAT-GGATTTATCTGAGG-TGTTATGTTGTTGC 1375
Query 1375 GTTGGTAAGACGATTTTTAAGAACTATGATGGTGTTTTTCAAACTCTTTTCAATCTGTTT 1434
|||||||||| |||||||||| |||| || |||||||||||||||||||||||| |||
Sbjct 1376 GTTGGTAAGAGGATTTTTAAGTACTAAGAACATGTTTTTCAAACTCTTTTCAATCTATTT 1435
Query 1435 CCC 1437
|||
Sbjct 1436 CCC 1438
> Ahg478282 jgi|Araly1|478282|fgenesh2_kg.3__983__AT3G09630.2
Length=1418
Score = 1373 bits (743), Expect = 0.0
Identities = 1067/1224 (87%), Gaps = 19/1224 (2%)
Strand=Plus/Plus
Query 57 GCCGCCGC-A--CGACCTCTTGTCACCGTCCAAGGACTT-GACGGTGACATGAGCACCGA 112
|||||||| | || ||||| |||||||||||| | || || ||||||||| ||||||
Sbjct 83 GCCGCCGCTACTCGTCCTCTCGTCACCGTCCAA-GTTTTGGATGGTGACATGTCCACCGA 141
Query 113 TCAATCCACCACCGTCACT-TTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTG 171
||||||| |||||||| | ||||| ||||||||||| || |||||||| || ||||| |
Sbjct 142 TCAATCCTCCACCGTC-GTATTACCCGACGTCATGACGGCGCCAGTTCGTCCAGACATCG 200
Query 172 TCAACTTCGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAA- 230
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 201 TTAACTTTGTCCACGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCCGTCT-CAAAG 259
Query 231 AAGGCCGGTCACCAAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATC 290
|||||||||||||| |||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 260 AAGGCCGGTCACCAGACCTCCGCGGAGTCCTGGGGAACCGGACGTGCCGTGTCTCGTATC 319
Query 291 CCTCGTGTTCCTGGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGT 350
|||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 320 CCTCGTGTTCCTGGTGGTGGTACTCACCGTGCTGGTCAAGCTGCGTTCGGTAACATGTGT 379
Query 351 CGTGGTGGTCGTATGTTTGCTCCGACTAAGATCTGGAGACGCTGGCACCGTCGTGTCAAT 410
||||||||||| ||||| ||||| || ||||||||| | |||||||||||||||||||||
Sbjct 380 CGTGGTGGTCGGATGTTCGCTCCTACCAAGATCTGGCGCCGCTGGCACCGTCGTGTCAAT 439
Query 411 GTCAACATGAAGAGGCACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTT 470
|| ||||||||| | ||||| || || || || ||||| || |||||||| || | |||
Sbjct 440 GTGAACATGAAGCGTCACGCAATCGTCTCAGCCATCGCCGCAACTGCTGTACCTTCGCTT 499
Query 471 GTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTTAGCGAC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 500 GTGATGGCTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTTGTTGTGAGTGAC 559
Query 531 TCAGCTGAAGCTGTGGAGAAGACATCAGCTGCGATCAAGGTATTGAAGCAGATCGGTGCT 590
|| || || |||||||||||||| |||||||||||||||||| |||| |||||||| |||
Sbjct 560 TCCGCCGAGGCTGTGGAGAAGACCTCAGCTGCGATCAAGGTACTGAAACAGATCGGGGCT 619
Query 591 TACGACGATGCGGAGAAAGCTAAGAACAGTATTGGAATTCGTCCTGGTAAAGGTAAAATG 650
|| || ||||| ||||| || ||| | || ||||| || |||||||||||||||||||||
Sbjct 620 TATGATGATGCTGAGAAGGCAAAGGATAGCATTGGGATCCGTCCTGGTAAAGGTAAAATG 679
Query 651 AGGAATCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTTGTGTT-TGGAACTGAAGGAGC 709
||||| |||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 680 AGGAACCGTCGTTACATTTCTAGGAAAGGTCCTCTTGTGGT-TTATGGAACTGAAGGAGC 738
Query 710 CAAGATTGTGAAAGCTTTTAGGAATCTTCCTGGTGTTGAGCTTTGTCACGTTGAGAGGCT 769
||||| || || || |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 739 TAAGATAGTTAAGGCGTTTAGGAATCTTCCTGGTGTTGAGCTCTGTCATGTGGAGAGGCT 798
Query 770 TAACTTGTTGAAA-TTAGCCCCTGGTGGTCACCTTGGTAGGTTTGTGATTTGGACTAAGT 828
||| |||||||| || || ||||||||||||||||| |||||||||| ||||| ||||
Sbjct 799 TAATTTGTTGAAGCTT-GCTCCTGGTGGTCACCTTGGGCGGTTTGTGATCTGGACCAAGT 857
Query 829 CTGCTTTTGAGAAGCTTGAATCTATCTATGGCTCGTTTGAGAAACCATCAGAGAAGAAGA 888
||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 858 CTGCTTTTGAGAAGCTTGAGTCTATCTATGGTTCGTTTGAGAAGCCATCAGAGAAAAAGA 917
Query 889 AGGGTTACGT-CTTGCCTCGTGCGAAGATGGTGAATGCTGATCTTGCTAGGATTATTAAC 947
|||| || || ||| |||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 918 AGGGATATGTGCTT-CCTCGTGCAAAGATGGTGAATGCTGATCTTGCCAGGATTATCAAC 976
Query 948 TCCGATGAGGTACAGAGTGTGGTGAACCCGATTAAGGATGGTTCC-AAGAGAGCGGTTCT 1006
|| |||||| | |||||||| ||||| ||||| ||| | || | | ||||| || |||||
Sbjct 977 TCAGATGAGATTCAGAGTGTTGTGAAGCCGATCAAGAA-GGATGCGAAGAGGGCTGTTCT 1035
Query 1007 GAAGAAGAATCCATTGAAGAACCTTAATGTGATGTTCAAGTTGAATCCTTATGCTAAGAC 1066
|||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||
Sbjct 1036 TAAGAAGAATCCATTGAAGAATCTGAATGTGATGTTGAAGCTGAATCCTTATGCTAAGAC 1095
Query 1067 CGCAAAGAGAATGTCTCTGTTGGCTGAAGCTTCAAGG-GTTAAGGCTAAGAAGGAGAAGC 1125
|| ||||| ||||| |||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 1096 TGCTAAGAGGATGTCACTGTTGGCTGAAGCA-CAAAGAGTTAAGGCTAAGAAGGAGAAGC 1154
Query 1126 TCGAGAAGAAGAGGAAAGTCGTCACTAAGGAGGAGGCCCAAGCGATCAAAGCAGCAGGCA 1185
| |||||||||||| ||| || ||||||||||| || ||||||||||||||||
Sbjct 1155 TTTCCAAGAAGAGGAAAACCGTTACCAAGGAGGAGGCGTTGGCAATCAAAGCAGCAGGCA 1214
Query 1186 AGGCTTGGTATCAGACTATGATTTCAGACAGTGACTACACCGAGTTCGATAACTTCACCA 1245
|| | ||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||
Sbjct 1215 AGTCGTGGTACCAGACTATGATCTCCGACAGTGATTACACCGAGTTTGATAACTTCACCA 1274
Query 1246 AGTGGCTTGGCGCTAGTCAGTAAT 1269
| ||||| || ||||| |||||||
Sbjct 1275 AATGGCTCGGTGCTAGCCAGTAAT 1298
> Ahg320281 jgi|Araly1|320281|fgenesh1_pm.C_scaffold_4000338
Length=1185
Score = 292 bits (158), Expect = 4e-78
Identities = 371/470 (79%), Gaps = 30/470 (6%)
Strand=Plus/Plus
Query 69 CCTCTTGTCACCGTCCAAGGACTTGACGGTGACATGAGCACCGATCAATCCACCAC-CGT 127
||||| || ||||||||| || ||||| || |||| ||| |||||| ||||||| | |
Sbjct 28 CCTCTAGTAACCGTCCAATCTCTGGACGGCGATATGATCACAGATCAAACCACCACAC-T 86
Query 128 CA-CTTTACCAGACGTCATGACTGCTCCAGTTCGACCTGACATTG--TCAACTTCGTCCA 184
| || | || || || |||| || |||||||| || ||| ||| || | | ||||
Sbjct 87 -ACCTCTCCCCGATGTAATGAAAGCACCAGTTCGTCCCGACGTTGTATC-CCAT-ATCCA 143
Query 185 CGCCCAAATCTCCAACAACAGCCGTCAGCCTTACGCAGTCTCCAAAA-AGGCCGGTCACC 243
||| || || || |||||||| || || |||||||| |||| ||||| | || ||||| |
Sbjct 144 CGCTCAGATATCAAACAACAGTCGCCAACCTTACGCCGTCT-CAAAACACGCTGGTCATC 202
Query 244 AAACCTCCGCCGAGTCCTGGGGAACCGGAAGAGCCGTGTCACGTATCCCTCGTGTT-CCT 302
|||| ||||||||||| ||||| || ||| ||||||| |||||||||||||||||| ||
Sbjct 203 AAACTTCCGCCGAGTCTTGGGGTACAGGACGAGCCGTATCACGTATCCCTCGTGTTGCC- 261
Query 303 GGTGGTGGAACTCACCGTGCCGGTCAAGCAGCGTTCGGAAACATGTGTCGTGGTGGTCGT 362
|| ||||||||||||||||||||||||||||| || || |||||||||||| |||| ||
Sbjct 262 GGAGGTGGAACTCACCGTGCCGGTCAAGCAGCTTTGGGTAACATGTGTCGTAGTGGACGA 321
Query 363 ATGTTTGCTCCGACTAAGATCTGGA--GACGCTGGCACCGTCGTGTCAAT-GTCAACATG 419
|||||||||||||| |||| || | | || |||||||||||||||||| | ||| ||
Sbjct 322 ATGTTTGCTCCGACGAAGA-CTT-ACCGTCGTTGGCACCGTCGTGTCAATAG-CAATTTG 378
Query 420 AAGAGG-CACGCGATTGTTTCTGCAATCGCTGCTACTGCTGTTCCAGCTCTT-GTGATGG 477
|| | | ||||||||||| || || || ||||| ||| | | ||| || |||||||
Sbjct 379 AA-ACGACACGCGATTGTATCAGCGATTGCTGCGACTTC-G-----GCT-TTAGTGATGG 430
Query 478 CTCGTGGTCACAAGATCGAGAATGTTCCTGAGATGCCTCTT-GTTGTTAG 526
||||||| || ||||| |||||| |||||||| | ||| || || |||||
Sbjct 431 CTCGTGGACATAAGATTGAGAATCTTCCTGAGTTTCCT-TTAGTGGTTAG 479
> Ahg314007 jgi|Araly1|314007|fgenesh1_pm.C_scaffold_1002787
Length=732
Score = 132 bits (71), Expect = 9e-30
Identities = 151/187 (81%), Gaps = 15/187 (8%)
Strand=Plus/Plus
Query 628 TTCGTCCTGGTAAAGGTAAAATGAGGAATCGTCGTTACATTTCTAGGAAAGGTCCTCTTG 687
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 242 TTCGTTCTGGTAAAGGTAAAATGAGGAATCGTCGTTACATTTTTAGGAAAGGTCCA-TTG 300
Query 688 -TTGTGTT-TGGAACTGAAGGAGCCAAGATT-GTGAAAGCTTTTAGGAATC-TTCCTGGT 743
|||| || ||||||| ||||| | | || ||| ||||||||||||| | || | ||
Sbjct 301 ATTGT-TTATGGAACTAAAGGATC---G-TTAGTGGAAGCTTTTAGGAA-CATTACAGG- 353
Query 744 G-TTGAGCTTTGTCACGTTGAGAGGCTTAACT-TGTTGAAATTAGCCCCTGGTGGTCACC 801
| |||| | ||| | || ||||| || | | | ||||| ||||| ||||||||||| |
Sbjct 354 GATTGATATATGTAATGTAGAGAGA-TTGAGTCTATTGAAGTTAGCTCCTGGTGGTCATC 412
Query 802 TTGGTAG 808
|||||||
Sbjct 413 TTGGTAG 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5