BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02890.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324948 jgi|Araly1|324948|fgenesh1_pm.C_scaffold_6000168 1563 0.0
> Ahg324948 jgi|Araly1|324948|fgenesh1_pm.C_scaffold_6000168
Length=1068
Score = 1563 bits (846), Expect = 0.0
Identities = 997/1070 (93%), Gaps = 10/1070 (1%)
Strand=Plus/Plus
Query 18 ATGGAAACCAAAATCCCTAAGTCAATGATCGCCGGAGTACAGACTGTCATGCCGGTGGAA 77
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGGAAACCAAAATTCCTAAGTCAATGATCGCCGGAGTACAGAGTGTCATGCCGGTGGAA 60
Query 78 GTGACGCAACACCGGGAAATCCGCTCCGTATCCGTCGTAGATCCCGTCGGAGTAGGAATA 137
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 61 GTGACGCGACACCGGGAAATCCGTTCCATATCCGTCGTAGATCCCGTCGGAGTAGGAATA 120
Query 138 TTCCGGCGAACGGTTAACATAGTTACGTATTACAAAGAAGCAG-GTGATAGTGGTGGTGA 196
||||| ||||| | ||||||||||| |||||||||||||| | | |||||||||| |||
Sbjct 121 TTCCGAAGAACGCTGAACATAGTTACTTATTACAAAGAAGC-GTGCGATAGTGGTGATGA 179
Query 197 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 239
Query 257 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGAAGACGGCGG-GGAATGATGGTTTGGAGT 315
|||||||||||||||||||||||||||||||| |||| ||| || | | |||| ||||||
Sbjct 240 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGACGACGTCGGCGG-AGGCTGGTCTGGAGT 298
Query 316 TAGTGGCCAATGATAGTGGTGTGAGGATGGTGGAGGCTAAGTTTCCGGCGAGTCTGCCGG 375
| ||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 299 TGGTGGCCAATGACAGTGGTATTAGGATGGTGGAGGCTAAGTTTCCGGCGAGTTTGCCGG 358
Query 376 AGTTTCTTGAAATGGCGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTTTTCTGGA 435
| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 ACTTTCTTGAAATGGTGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTCTTCTGGA 418
Query 436 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 478
Query 496 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCTTCC 555
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCCTCC 538
Query 556 TTGAGACAGGTTTCTTAACCAAATGGGCTCAAATCCAAAGCTCTTTAGCTCA-----AAC 610
||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 539 TTGAGACAGATTTCTTAACCAAATGGGCTCAAATCCAAACCTCTTTAGCTCATTCTCAAA 598
Query 611 C-ACACTCAAACCAGTATTCCACCTCCCTTCTCTCAAGCAAGACTTTGGTAATTTCCTCA 669
| |||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 599 CTACACTCAAACCAATATTCCACCTCCCTTCTCTCAAACAAGATTTTGGTAATTTCCTCA 658
Query 670 CTGAATTTTTTAGGTCAGCCTCGGTTCTCGACCGCGGCGAACCTATTGCTTTTCGGGCCA 729
|||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 659 TTGAATTTTCGAGGTCAGCCTCGGTTCTCGACCGCGGTGAACCTGTTGCTTTTCAGGCCA 718
Query 730 AAACATGCCTGAAAATATCACCAGCCTGCATTGTAACTAGCAAAAGAACGAGTGGGGATG 789
||||||| ||||| || |||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 719 AAACATGTCTGAAGATTTCACCAGCCTGCATTGGAACCCGCAAAAGAACGAGGGGGGATG 778
Query 790 TTTTCTTATTCATCAAGGAACAAAGCAGTGGCGAAAATAGTACTGGATGTGATGGTACGA 849
||||||| ||||| ||||||||| || ||||| |||||||||| ||||||||||||| ||
Sbjct 779 TTTTCTTGTTCATTAAGGAACAAGGCGGTGGCAAAAATAGTACCGGATGTGATGGTATGA 838
Query 850 AGGTAGAGATACATTCGAGTGATGAAGTGATTAAGGGTTGCGATTGCGGTCGTGATTCAG 909
||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 839 AGGTACAGATACATTCGAGTGATGAAGTGATTAACGGTTGCGATTGCGGTAGTGATTTGG 898
Query 910 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTATCGTTTGGGGAAAGACTTGAAGTTA 969
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTAACGTTTGGGGAAAGACTTGAAGTTA 958
Query 970 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTAGTATTTGTTTTCCCATCTACTTTTG 1029
|||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||
Sbjct 959 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTTGTGTTTGTTTTCCCATCTATTTTTG 1018
Query 1030 GGGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5