BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02890.1 Length=1221 Score E Sequences producing significant alignments: (Bits) Value Ahg324948 jgi|Araly1|324948|fgenesh1_pm.C_scaffold_6000168 1563 0.0 > Ahg324948 jgi|Araly1|324948|fgenesh1_pm.C_scaffold_6000168 Length=1068 Score = 1563 bits (846), Expect = 0.0 Identities = 997/1070 (93%), Gaps = 10/1070 (1%) Strand=Plus/Plus Query 18 ATGGAAACCAAAATCCCTAAGTCAATGATCGCCGGAGTACAGACTGTCATGCCGGTGGAA 77 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 ATGGAAACCAAAATTCCTAAGTCAATGATCGCCGGAGTACAGAGTGTCATGCCGGTGGAA 60 Query 78 GTGACGCAACACCGGGAAATCCGCTCCGTATCCGTCGTAGATCCCGTCGGAGTAGGAATA 137 ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 61 GTGACGCGACACCGGGAAATCCGTTCCATATCCGTCGTAGATCCCGTCGGAGTAGGAATA 120 Query 138 TTCCGGCGAACGGTTAACATAGTTACGTATTACAAAGAAGCAG-GTGATAGTGGTGGTGA 196 ||||| ||||| | ||||||||||| |||||||||||||| | | |||||||||| ||| Sbjct 121 TTCCGAAGAACGCTGAACATAGTTACTTATTACAAAGAAGC-GTGCGATAGTGGTGATGA 179 Query 197 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GAGAGGGTGGTTAGTCGCCGGGTGGATCAAGGAATCTTTAGGGAGAGCCTTGACGGAGCA 239 Query 257 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGAAGACGGCGG-GGAATGATGGTTTGGAGT 315 |||||||||||||||||||||||||||||||| |||| ||| || | | |||| |||||| Sbjct 240 GCCGATGCTTTCCGGTAGGCTACGGAGGAGGACGACGTCGGCGG-AGGCTGGTCTGGAGT 298 Query 316 TAGTGGCCAATGATAGTGGTGTGAGGATGGTGGAGGCTAAGTTTCCGGCGAGTCTGCCGG 375 | ||||||||||| |||||| | |||||||||||||||||||||||||||||| |||||| Sbjct 299 TGGTGGCCAATGACAGTGGTATTAGGATGGTGGAGGCTAAGTTTCCGGCGAGTTTGCCGG 358 Query 376 AGTTTCTTGAAATGGCGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTTTTCTGGA 435 | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 359 ACTTTCTTGAAATGGTGAAGAGAGACAAAAGCAGAGCTGAAGCAGAGACTGTCTTCTGGA 418 Query 436 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 AAGACATTGATGAAGATGAACCTCAATACTCTCCATTGTTCTATGTTCAGGTGACTAATT 478 Query 496 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCTTCC 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 479 TTGAGAGTGGTGGGTACTCAATTGGGATAAGCTGCAGCATCCTAATAGCTGATCTCCTCC 538 Query 556 TTGAGACAGGTTTCTTAACCAAATGGGCTCAAATCCAAAGCTCTTTAGCTCA-----AAC 610 ||||||||| ||||||||||||||||||||||||||||| |||||||||||| || Sbjct 539 TTGAGACAGATTTCTTAACCAAATGGGCTCAAATCCAAACCTCTTTAGCTCATTCTCAAA 598 Query 611 C-ACACTCAAACCAGTATTCCACCTCCCTTCTCTCAAGCAAGACTTTGGTAATTTCCTCA 669 | |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 599 CTACACTCAAACCAATATTCCACCTCCCTTCTCTCAAACAAGATTTTGGTAATTTCCTCA 658 Query 670 CTGAATTTTTTAGGTCAGCCTCGGTTCTCGACCGCGGCGAACCTATTGCTTTTCGGGCCA 729 |||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| Sbjct 659 TTGAATTTTCGAGGTCAGCCTCGGTTCTCGACCGCGGTGAACCTGTTGCTTTTCAGGCCA 718 Query 730 AAACATGCCTGAAAATATCACCAGCCTGCATTGTAACTAGCAAAAGAACGAGTGGGGATG 789 ||||||| ||||| || |||||||||||||||| ||| ||||||||||||| ||||||| Sbjct 719 AAACATGTCTGAAGATTTCACCAGCCTGCATTGGAACCCGCAAAAGAACGAGGGGGGATG 778 Query 790 TTTTCTTATTCATCAAGGAACAAAGCAGTGGCGAAAATAGTACTGGATGTGATGGTACGA 849 ||||||| ||||| ||||||||| || ||||| |||||||||| ||||||||||||| || Sbjct 779 TTTTCTTGTTCATTAAGGAACAAGGCGGTGGCAAAAATAGTACCGGATGTGATGGTATGA 838 Query 850 AGGTAGAGATACATTCGAGTGATGAAGTGATTAAGGGTTGCGATTGCGGTCGTGATTCAG 909 ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||| | Sbjct 839 AGGTACAGATACATTCGAGTGATGAAGTGATTAACGGTTGCGATTGCGGTAGTGATTTGG 898 Query 910 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTATCGTTTGGGGAAAGACTTGAAGTTA 969 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 899 AGGAGACAAATGATGGAGTACTTGATAAGAGTTTAACGTTTGGGGAAAGACTTGAAGTTA 958 Query 970 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTAGTATTTGTTTTCCCATCTACTTTTG 1029 |||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| Sbjct 959 CTTCATGTTGGGTTGGGTGTGTCTCAAAAGGGGTTGTGTTTGTTTTCCCATCTATTTTTG 1018 Query 1030 GGGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AAGATGCCAAGTCGCTAGCCAAATTTATTGTTGCACTGCCAAAAGAGTAA 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45595008732 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5