BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G02910.1 Length=1546 Score E Sequences producing significant alignments: (Bits) Value Ahg487069 jgi|Araly1|487069|fgenesh2_kg.6__203__AT5G02910.1 2185 0.0 Ahg349578 jgi|Araly1|349578|fgenesh1_pg.C_scaffold_6000171 185 7e-46 > Ahg487069 jgi|Araly1|487069|fgenesh2_kg.6__203__AT5G02910.1 Length=1450 Score = 2185 bits (1183), Expect = 0.0 Identities = 1363/1452 (94%), Gaps = 4/1452 (0%) Strand=Plus/Plus Query 21 TCCCCGCCAAAACATGATAACTGGCGATTCAATCGACGGTATGGATTTCATCAGCTCTCT 80 ||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| Sbjct 1 TCCCCGCCAAAACATGATAACAGGCGATTCAATCGACGGTGTAGATTTCATCAGCTCTCT 60 Query 81 ACCTGACG-AGATTCTCCACCATATCCTCTCCTCTGTTCCGACCAAATCCGCGATCAGAA 139 |||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 ACCTGACGTA-ATTCTCCACCATATCCTCTCCTCTGTCCCGACCAAATCCGCGATCAGAA 119 Query 140 CCTCTCTCTTGTCCAAACGGTGGAGATATGTTTGGTCCGAGACACCTTCTCTCTCCATTG 199 ||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct 120 CCTCTCTCTTGTCCAAACGATGGAGGTATGTTTGGTCTGAGACACCTTCTCTCTCCATTG 179 Query 200 ATTGCCGTAGAGCCGATCCTAATTCGATCGATAAAACTCTATCTTTCTTCTCCGCTCCCA 259 ||||||||||| |||| |||||||||||||| ||||| ||| |||||||||||||||||| Sbjct 180 ATTGCCGTAGAACCGACCCTAATTCGATCGACAAAACCCTAGCTTTCTTCTCCGCTCCCA 239 Query 260 AAATCACAAGCTTTCATCTTCATACAACCTTACTCAACAGGATTGATTCTGTTAATGGCT 319 ||||||| ||||| |||||| ||||| ||||||||||||||||||| || ||||| ||| Sbjct 240 AAATCACGAGCTTCCATCTTTGTACAAGCTTACTCAACAGGATTGATCCTCTTAATAGCT 299 Query 320 GCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTTTCACTGGAGTCTCGTGATTATC 379 | ||||||||||||||||||||| || | ||||||||||||||||||| |||||||| | Sbjct 300 GGATCGAATTCGCCATTTCTCACGACTCGGAGAAGCTTTCACTGGAGTTTCGTGATTCCC 359 Query 380 GTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 439 |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 GTGTTAGGGATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 419 Query 440 TTGTCGACTCTGGATCTGTTCATTTGATTCCCAGATGCACTGTCTCTTGGACTTCTCTAA 499 | ||| |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| Sbjct 420 TGGTCAACTCTGGATCTGTTGATTTGATTCCCAGATGCTCTGTCTCTTGGACATCTCTAA 479 Query 500 AGAACTTGTCTTTGAGCAATTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 559 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AGAACTTGTCTTTGAGCTTTTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 539 Query 560 GTTCTCCACTTCTGGAAAGCTTGGAGTTGTTGTATTGTGCTGAATAT-ATGTGTCTTGAT 618 ||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||||| Sbjct 540 GTTCTCCACTTCTGGAAAGCTTGGAATTGTTGTACTGTGCTGAAT-TCATGTGTCTTGAT 598 Query 619 CTGAGTCAATCACAGCATCTAAGAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 678 ||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||||| Sbjct 599 CTGAGTCAATCACCGCGTTTAAAAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 658 Query 679 CCAACGAAGATTGTGGCACCGCATCTCCATTGTTTGAGATTGAGACACTCGAGATTACCA 738 | ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct 659 CAAACGAAGATTGTGGCGCCGCATCTACATTGTTTGAGATTGAGACACTCTCGATTACCA 718 Query 739 TGTAGTTTAGTTGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTGGCGAT 798 ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 719 TGTAGTTTAGTGGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTTGCGAT 778 Query 799 CTTAAAACTGTTACCGCTGGTTTTCTTCAACACAATGTGGTCAAGATGCTACAAATGTTG 858 ||| ||| |||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 779 CTTGGAACACTTACCGCTGGTTTTCTTCAACATAATGTGGTAAAGATGCTACAAATGTTG 838 Query 859 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTTGCCGCG 918 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 839 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTAGCTGCG 898 Query 919 CTCTGTGGTGTACCTTTTCCGACGCTCAAGGTCAAAACTTTGACTCTCGAAACGATGATT 978 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 899 CTCTGTGGTGTACCTTTTCCGATGCTCAAGGTCAAAACTTTGACTCTTGAAACGATGATT 958 Query 979 ATTCGGTCTGTTATTCCTGGTATAACAAAGCTACTACGGTACACACCTGGATTACGGAAG 1038 ||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||| Sbjct 959 ATTCGGTCTGTTATTCCTGGTATAACAGAGCTGCTACGGAACACACCTGGATTAAGGAAG 1018 Query 1039 CTAACAATTCACACTGTGAAATGCAGCAGCATATCGGAATTGCATCTCAATGACTACTTG 1098 ||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||| Sbjct 1019 CTAACAATTCACACTGTGAAAGGCAGCAGCATATCGGAATTGCATCTCAACGCCTACTTG 1078 Query 1099 CGTAAACATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1158 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 CGTTTGCATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1138 Query 1159 TCTCTTGAGACCATTTCGATGTTGGCGAGTAAACACGCAGAGTCCAATCTCGTGGCTTTG 1218 ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| Sbjct 1139 TCTCTTGAGACCATTTCGATGTTGGTGGGTAAACATGCAGAGTCCAATCTCGTGGCTTTG 1198 Query 1219 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1258 Query 1279 GATTACCTTGATGCATTGGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1338 | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 GGTTACCTTGATGCATCAGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1318 Query 1339 AACAATGATGTCTCTGTTTTGATCAAACGAAGCTATATAAAGTATGTATCCAACACTTTC 1398 ||||| |||||||| |||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 1319 AACAACGATGTCTCCGTTTTGATTAAACGAAGCTATATAAAGTGTGTATCCAACACTTTC 1378 Query 1399 CCTCAACGATAGTGTCTCGATTGATCAAAAGCAAATGCCATTGTTAAATATGTATCATTA 1458 ||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 1379 CCTCAGCGATAATGTCTTAATTGATCAAAAGCAAAAGCCATTGTTAAATATGTATCATTA 1438 Query 1459 GATTTTCGACCT 1470 |||||||||||| Sbjct 1439 GATTTTCGACCT 1450 > Ahg349578 jgi|Araly1|349578|fgenesh1_pg.C_scaffold_6000171 Length=1191 Score = 185 bits (100), Expect = 7e-46 Identities = 171/205 (83%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 299 GGATTGA-TTCTGTTAATGGCTGCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 357 ||||| | || ||||||| | || |||||||||||||||||||||||||||||||||||| Sbjct 227 GGATTCACTT-TGTTAATAGTTGGATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 285 Query 358 TCACTGGAGTCTCGTGATTATCGTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACC 417 |||||||| | ||||||| ||||| || ||||||||||||| | ||||||||||||| Sbjct 286 TCACTGGATTTTCGTGATGCCCGTGTTAGGGATTACAAGTTTCCAGGTTTCTTCTACACC 345 Query 418 AATTCATCTGTGAAGCAACTCTTTG-TCGACT-CTGGATCTGTTCATTTGATTCCCAGAT 475 ||||| ||||| ||||||| ||| | || | | | ||| ||| | | |||||||| || | Sbjct 346 AATTCCTCTGTTAAGCAACCCTT-GATC-AGTTCGGGACCTGCTGAGTTGATTCCGAGTT 403 Query 476 GCACTGTCTCTTGGACTTCTCTAAA 500 |||| || |||||||| |||||||| Sbjct 404 GCACCGTTTCTTGGACATCTCTAAA 428 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57897172400 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5