BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02910.1
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487069 jgi|Araly1|487069|fgenesh2_kg.6__203__AT5G02910.1 2185 0.0
Ahg349578 jgi|Araly1|349578|fgenesh1_pg.C_scaffold_6000171 185 7e-46
> Ahg487069 jgi|Araly1|487069|fgenesh2_kg.6__203__AT5G02910.1
Length=1450
Score = 2185 bits (1183), Expect = 0.0
Identities = 1363/1452 (94%), Gaps = 4/1452 (0%)
Strand=Plus/Plus
Query 21 TCCCCGCCAAAACATGATAACTGGCGATTCAATCGACGGTATGGATTTCATCAGCTCTCT 80
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 1 TCCCCGCCAAAACATGATAACAGGCGATTCAATCGACGGTGTAGATTTCATCAGCTCTCT 60
Query 81 ACCTGACG-AGATTCTCCACCATATCCTCTCCTCTGTTCCGACCAAATCCGCGATCAGAA 139
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 ACCTGACGTA-ATTCTCCACCATATCCTCTCCTCTGTCCCGACCAAATCCGCGATCAGAA 119
Query 140 CCTCTCTCTTGTCCAAACGGTGGAGATATGTTTGGTCCGAGACACCTTCTCTCTCCATTG 199
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 120 CCTCTCTCTTGTCCAAACGATGGAGGTATGTTTGGTCTGAGACACCTTCTCTCTCCATTG 179
Query 200 ATTGCCGTAGAGCCGATCCTAATTCGATCGATAAAACTCTATCTTTCTTCTCCGCTCCCA 259
||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 180 ATTGCCGTAGAACCGACCCTAATTCGATCGACAAAACCCTAGCTTTCTTCTCCGCTCCCA 239
Query 260 AAATCACAAGCTTTCATCTTCATACAACCTTACTCAACAGGATTGATTCTGTTAATGGCT 319
||||||| ||||| |||||| ||||| ||||||||||||||||||| || ||||| |||
Sbjct 240 AAATCACGAGCTTCCATCTTTGTACAAGCTTACTCAACAGGATTGATCCTCTTAATAGCT 299
Query 320 GCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTTTCACTGGAGTCTCGTGATTATC 379
| ||||||||||||||||||||| || | ||||||||||||||||||| |||||||| |
Sbjct 300 GGATCGAATTCGCCATTTCTCACGACTCGGAGAAGCTTTCACTGGAGTTTCGTGATTCCC 359
Query 380 GTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 439
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GTGTTAGGGATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 419
Query 440 TTGTCGACTCTGGATCTGTTCATTTGATTCCCAGATGCACTGTCTCTTGGACTTCTCTAA 499
| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 420 TGGTCAACTCTGGATCTGTTGATTTGATTCCCAGATGCTCTGTCTCTTGGACATCTCTAA 479
Query 500 AGAACTTGTCTTTGAGCAATTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 559
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGAACTTGTCTTTGAGCTTTTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 539
Query 560 GTTCTCCACTTCTGGAAAGCTTGGAGTTGTTGTATTGTGCTGAATAT-ATGTGTCTTGAT 618
||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct 540 GTTCTCCACTTCTGGAAAGCTTGGAATTGTTGTACTGTGCTGAAT-TCATGTGTCTTGAT 598
Query 619 CTGAGTCAATCACAGCATCTAAGAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 678
||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 CTGAGTCAATCACCGCGTTTAAAAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 658
Query 679 CCAACGAAGATTGTGGCACCGCATCTCCATTGTTTGAGATTGAGACACTCGAGATTACCA 738
| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 659 CAAACGAAGATTGTGGCGCCGCATCTACATTGTTTGAGATTGAGACACTCTCGATTACCA 718
Query 739 TGTAGTTTAGTTGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTGGCGAT 798
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 TGTAGTTTAGTGGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTTGCGAT 778
Query 799 CTTAAAACTGTTACCGCTGGTTTTCTTCAACACAATGTGGTCAAGATGCTACAAATGTTG 858
||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 779 CTTGGAACACTTACCGCTGGTTTTCTTCAACATAATGTGGTAAAGATGCTACAAATGTTG 838
Query 859 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTTGCCGCG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 839 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTAGCTGCG 898
Query 919 CTCTGTGGTGTACCTTTTCCGACGCTCAAGGTCAAAACTTTGACTCTCGAAACGATGATT 978
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 899 CTCTGTGGTGTACCTTTTCCGATGCTCAAGGTCAAAACTTTGACTCTTGAAACGATGATT 958
Query 979 ATTCGGTCTGTTATTCCTGGTATAACAAAGCTACTACGGTACACACCTGGATTACGGAAG 1038
||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||
Sbjct 959 ATTCGGTCTGTTATTCCTGGTATAACAGAGCTGCTACGGAACACACCTGGATTAAGGAAG 1018
Query 1039 CTAACAATTCACACTGTGAAATGCAGCAGCATATCGGAATTGCATCTCAATGACTACTTG 1098
||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1019 CTAACAATTCACACTGTGAAAGGCAGCAGCATATCGGAATTGCATCTCAACGCCTACTTG 1078
Query 1099 CGTAAACATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1158
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CGTTTGCATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1138
Query 1159 TCTCTTGAGACCATTTCGATGTTGGCGAGTAAACACGCAGAGTCCAATCTCGTGGCTTTG 1218
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 1139 TCTCTTGAGACCATTTCGATGTTGGTGGGTAAACATGCAGAGTCCAATCTCGTGGCTTTG 1198
Query 1219 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1258
Query 1279 GATTACCTTGATGCATTGGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1338
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTTACCTTGATGCATCAGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1318
Query 1339 AACAATGATGTCTCTGTTTTGATCAAACGAAGCTATATAAAGTATGTATCCAACACTTTC 1398
||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1319 AACAACGATGTCTCCGTTTTGATTAAACGAAGCTATATAAAGTGTGTATCCAACACTTTC 1378
Query 1399 CCTCAACGATAGTGTCTCGATTGATCAAAAGCAAATGCCATTGTTAAATATGTATCATTA 1458
||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1379 CCTCAGCGATAATGTCTTAATTGATCAAAAGCAAAAGCCATTGTTAAATATGTATCATTA 1438
Query 1459 GATTTTCGACCT 1470
||||||||||||
Sbjct 1439 GATTTTCGACCT 1450
> Ahg349578 jgi|Araly1|349578|fgenesh1_pg.C_scaffold_6000171
Length=1191
Score = 185 bits (100), Expect = 7e-46
Identities = 171/205 (83%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 299 GGATTGA-TTCTGTTAATGGCTGCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 357
||||| | || ||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 227 GGATTCACTT-TGTTAATAGTTGGATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTT 285
Query 358 TCACTGGAGTCTCGTGATTATCGTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACC 417
|||||||| | ||||||| ||||| || ||||||||||||| | |||||||||||||
Sbjct 286 TCACTGGATTTTCGTGATGCCCGTGTTAGGGATTACAAGTTTCCAGGTTTCTTCTACACC 345
Query 418 AATTCATCTGTGAAGCAACTCTTTG-TCGACT-CTGGATCTGTTCATTTGATTCCCAGAT 475
||||| ||||| ||||||| ||| | || | | | ||| ||| | | |||||||| || |
Sbjct 346 AATTCCTCTGTTAAGCAACCCTT-GATC-AGTTCGGGACCTGCTGAGTTGATTCCGAGTT 403
Query 476 GCACTGTCTCTTGGACTTCTCTAAA 500
|||| || |||||||| ||||||||
Sbjct 404 GCACCGTTTCTTGGACATCTCTAAA 428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57897172400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5