BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02930.1
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892198 jgi|Araly1|892198|Al_scaffold_0006_194 797 0.0
Ahg349579 jgi|Araly1|349579|fgenesh1_pg.C_scaffold_6000172 638 0.0
Ahg932542 jgi|Araly1|932542|scaffold_400530.1 121 2e-26
> Ahg892198 jgi|Araly1|892198|Al_scaffold_0006_194
Length=1329
Score = 797 bits (431), Expect = 0.0
Identities = 883/1089 (81%), Gaps = 79/1089 (7%)
Strand=Plus/Plus
Query 31 CGTCCCGTCATGTTTAAACGATCAAAAAATGTTTCAGTCGATGTTGGTGTAGACTCAATC 90
|||||||||| | |||||||||| || || |||| |||| ||||||||||||||||
Sbjct 64 CGTCCCGTCAAAATCAAACGATCAAGAAGTGATTCAATCGA---TGGTGTAGACTCAATC 120
Query 91 AGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATATTCCGACAGAGTTGGCG 150
||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct 121 AGCGATCTACCAGACGCGGTTCTCCAACATATCTTCTCCTATATTCCGACAAAGTTCGCG 180
Query 151 ATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGTCCGAGACACCTCATCTC 210
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 ATCAGAACCTCCGTCTTGTCCAGGCGATGGAGACATGTATGGTCGGAGACACCTCATCTC 240
Query 211 TCCTTTGAATGGCTCAAG-GTTTCCCCTA-AATTGATAAACAAAACCCTAGCCAGCTACA 268
|||||| |||||||| || |||||||| | ||| | |||||||||||||||| |||||||
Sbjct 241 TCCTTTAAATGGCTC-AGTGTTTCCCC-AGAATCGGTAAACAAAACCCTAGCGAGCTACA 298
Query 269 CGGCTTCCAAGATCAAGAGTTTTCATCTCTGTACCCG-TTA--CAGCTACGAGGCAGACA 325
||||||||| |||| ||||||||||||||||||||| ||| |||| || ||| ||
Sbjct 299 AGGCTTCCAAAATCACGAGTTTTCATCTCTGTACCCGTTTAGCCAGC-AC--GGC--TCA 353
Query 326 CTCACCATGTTAACAGCTCGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTCTC 385
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 -TCACCATGTTAATAGCTGGATCGAGTTTGCAATGTCTCACAACGTGGATGATCTTTTTC 412
Query 386 TGGCGTTCCGTAGATGT-TCAC--CGTT---TTACAATTTTG-ATGATTGCTTCTACACC 438
||| ||||||| | | | |||| || | ||||| |||| | |||| |||||||| |
Sbjct 413 TGGAGTTCCGTGGTTTTCTCACAACGATGAATTACAGTTTTCCA-GATTTCTTCTACAGC 471
Query 439 AACTCCTCTCTAAAGCGAG-TCG-AGTTGAG--AT-ATGT--TGATTTGATGCCCAGGTG 491
|| |||||||||||| | || ||| || | |||| ||| |||| ||||| ||
Sbjct 472 AATTCCTCTCTAAAGA-ACCTCATAGTAGACTCACGATGTAATGAGATGATTCCCAGATG 530
Query 492 CATGGTGTCTTGGACATCACTAAAGAACCTGTCTTTGACC-GATTGTACAA-TGTCTGAT 549
|| ||||||||||| ||||||||| || ||||||||| | | |||| || | ||||||
Sbjct 531 CACCGTGTCTTGGACGTCACTAAAGTACTTGTCTTTGAGCTG-TTGTG-AACTCTCTGAT 588
Query 550 GAATCCTTTCTTGAGATTCTGTCTGGTTGTCCAATCCTGGAAAGCTTGAGTTTG-A-AGT 607
|||||||||||| |||||||||||||||||||||||||||||| |||||| ||| | |||
Sbjct 589 GAATCCTTTCTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAACCTTGAGATTGTATAGT 648
Query 608 TTTGTATGTCACTCAAGTATCTTAATCTGAGTAAATCGCTGCGCTTGACAAGATTGGAGA 667
| || || ||| | | ||||||| |||||||||||||||||| ||||| | |||||| |
Sbjct 649 TATG-AT-TCAGTTAGGTATCTTGATCTGAGTAAATCGCTGCACTTGAGGATATTGGATA 706
Query 668 TAGAACGCATA-TCCTATATTCGAGCACCAATGCTGTCTATGCAGATCGTGGCGCCATAT 726
|||| | | || | | || || | | || |||| | || |||||||| ||
Sbjct 707 TAGATTTC-TCCTCTTTTTTT--AG-A--AG-GC---CTATAAATATTGTGGCGCCCCAT 756
Query 727 ATCCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCACTTTCGTTGATGTCTCTTCT 786
||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||
Sbjct 757 ATCCATTATTTGAGATTGAGAAACTCTGAGGCACAATGTACTTTAGTTGATGTCTCCTCT 816
Query 787 TTAACAGAAGCTAATGTCGACGTTAGC-ACTTTCCATCCTAGAAC-CTGTTAT--CATGA 842
||||| |||||||| || ||| ||||| | | || | || || ||||||| || |
Sbjct 817 TTAACTGAAGCTAAAGTAGACATTAGCTA-TATCGAACC-AGGTTGCTGTTATTACA-G- 872
Query 843 TTTTGACCCCTTAGAC-CCTCATGATCTTCTAG-TCATGGTGCAAACAATGCTA-AAAAC 899
|||| | | ||| || ||| ||| ||||| || | || |||||| |||||||| ||||
Sbjct 873 TTTTCAGCTCTT-GAAGCCTGATGTTCTTCAAGGT-ATAGTGCAAGCAATGCTAGAAAA- 929
Query 900 GTTTCAGAAA-GTAGAGAAGCTTACTTTGGGGGTTAA-TTTACTTCAGATGTTATCACTT 957
|||||| ||| ||||||||||||||||| |||||||| ||| |||||||||||||| |||
Sbjct 930 GTTTCA-AAACGTAGAGAAGCTTACTTTTGGGGTTAACTTT-CTTCAGATGTTATCTCTT 987
Query 958 TCC-AAGATCCCT-AGTCTTCCATTGCCGATGCT-AAAGGTCAAAACTTTGACTCTTGAA 1014
|| || ||| | | | |||| || |||||||| |||| || || ||||| |||||||
Sbjct 988 GCCGAA-ATCTGTGA-TATTCCTTTTCCGATGCTCAAAG-TCGAAGTTTTGATTCTTGAA 1044
Query 1015 ACAATGATTAT-CCGATCTGTGGTTCCTGGTATTGCAA-GACTGCTACAAAACTTACCTG 1072
|| |||||| | ||| ||||| |||||||||| |||| | ||| ||||||||| |||||
Sbjct 1045 ACGATGATTGTTCCG-TCTGTCATTCCTGGTATAGCAAAG-CTGTTACAAAACTCACCTG 1102
Query 1073 GATTAAAGA 1081
|| | ||||
Sbjct 1103 GAGTGAAGA 1111
> Ahg349579 jgi|Araly1|349579|fgenesh1_pg.C_scaffold_6000172
Length=1431
Score = 638 bits (345), Expect = 0.0
Identities = 549/641 (86%), Gaps = 40/641 (6%)
Strand=Plus/Plus
Query 476 ATTTGATG-CCCAGG-TGCATGGTGTCTTGGACATCACTAAAGAACCTGTCTTTGACCGA 533
|||||| | ||| || |||| || ||||||||||||||||||||| ||||||| | |
Sbjct 530 ATTTGA-GTCCC-GGATGCACCGTTTCTTGGACATCACTAAAGAACTTGTCTTTAAGCTC 587
Query 534 TTGTACAA-TGTCTGATGAATCCTTTCTTGAGATTCTGTCTGGTTGTCCAATCCTGGAAA 592
||||| || | |||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 588 TTGTA-AACTCTCTGATGATTCCTTACTTAAGATTCTGTCTGGTTGTCCAATCCTGGAAA 646
Query 593 GCTTGAGTTTGAAGTTTTGTATGTCACTCAAGTATCTTAATCTGAGTAAATCGCTGCGCT 652
||||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||
Sbjct 647 CCTTGAGTTTGAAGTTTTGTATCTCACTCATGTATGTTGATCTGAGTAAATCGCTGCGCT 706
Query 653 TGACAAGATTGGAGATAGAA---CGCATATCCTATATTCGAGCACCAATGCTGTCTATGC 709
|||||||||||||||||||| |||| | ||| | ||| || || | | ||||
Sbjct 707 TGACAAGATTGGAGATAGAACGCCGCA-ACCCT-T-TTC---CA-GAA--C---CAATGC 754
Query 710 AGATCGTGGCGCCATATATCCATTATTTGAGATTGAGAGACTCTGAGGCACACTGCA-CT 768
|||| ||||||||| || ||| |||||||||||||||||||||||||||||| |||| ||
Sbjct 755 AGATTGTGGCGCCACATGTCCGTTATTTGAGATTGAGAGACTCTGAGGCACAATGCACCT 814
Query 769 TTCGTTGATGTCTCTTCTTTAACAGAAGCTAATGTCGACGTTAGC-ACTTTCCATCCTAG 827
| | ||||||||||||||||||||||||||||||| ||| ||| | | |||| |||||||
Sbjct 815 TAC-TTGATGTCTCTTCTTTAACAGAAGCTAATGTAGACTTTACCGATTTTC-ATCCTAG 872
Query 828 AACC-TGTTATCATGATTTTGACCCCTTAGACCCTCA-TGATCTTCTAGTCATGGTGCAA 885
|||| | |||||||| |||||| |||||||||||| | || ||||||||||| |||||||
Sbjct 873 AACCCT-TTATCATGGTTTTGAGCCCTTAGACCCT-AGTGTTCTTCTAGTCACGGTGCAA 930
Query 886 ACAATGCTAAAA-ACGTTTCAGAAAGTAGAGAAGCTTACTTTGGGGGTTAA-TTTACTTC 943
|| |||||| || | ||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 931 ACGATGCTAGAACA-GTTTCAGAACGTAGAGAAGCTTACTTTGGGGGTTAACTTT-CTTC 988
Query 944 AGATGTTATCACTTTCCAAGATCCCTAGTCTTCCATTGCCGATGCT-AAAGGTCAAAACT 1002
|||||||||| |||||||||||||||||||||||||| |||| ||| |||| |||||| |
Sbjct 989 AGATGTTATCTCTTTCCAAGATCCCTAGTCTTCCATTACCGACGCTCAAAG-TCAAAAAT 1047
Query 1003 TTGACTCTTGAAACAATGATTAT-CCGATCTGTGGTTCCTGGTATTGCAAGACTGCTACA 1061
||||||||||||||| |||||| || | |||||||||||||||| |||| || ||||
Sbjct 1048 CTGACTCTTGAAACAAGGATTATGCCAA-CTGTGGTTCCTGGTATAACAAGGCTATTACA 1106
Query 1062 AAACTTACCTGGATTAAAGAAGATAACAGT--TT-ACACAA 1099
||||| |||||||||| ||||| ||||||| || ||||||
Sbjct 1107 AAACTCACCTGGATTAGAGAAGTTAACAGTACTTTACACAA 1147
Score = 392 bits (212), Expect = 3e-108
Identities = 290/326 (89%), Gaps = 12/326 (4%)
Strand=Plus/Plus
Query 75 TGGTGTAGAC-TCAATCAGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATA 133
|||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 96 TGGTATAGACAT-AATCAGCGATCTACCCGACGCGGTTCTCCAACATATCTTCTCCTATA 154
Query 134 TTCCGACAGAGTTGGCGATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGT 193
|||||||| |||| || |||||||| || |||||||| ||||||||||||||||||||||
Sbjct 155 TTCCGACAAAGTTTGCTATCAGAACATCCGTCTTGTCAAAACGATGGAGACATGTATGGT 214
Query 194 CCGAGACACCTCATCTCTCCTTTGAATGGCTCAAG-GTTTCCCCTAAATTGATAAACAAA 252
|||||||||||||||||||||||| ||| || || | ||||||||||||||||||||||
Sbjct 215 CCGAGACACCTCATCTCTCCTTTGGTTGGTTC-AGTGGTTCCCCTAAATTGATAAACAAA 273
Query 253 ACCCTAGCCAGCTACACGGCTTCCAAGATCAAGAGTTTTCATCTCTGTACCCGTTACAGC 312
||||||||||||||| |||||||||| |||| |||||| |||||||||||||||||| ||
Sbjct 274 ACCCTAGCCAGCTACTCGGCTTCCAAAATCACGAGTTTCCATCTCTGTACCCGTTACTGC 333
Query 313 TACGAGGCAGACACTCACCATGTTAACAGCTCGATCGAGTTTGCAATGTCTCACAACGTG 372
||| |||| | || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 334 TACAAGGCT-A-AC-CA---TGTTAATAGCTCGATCGAGTTTGCAATGTCTCACAACGTT 387
Query 373 GATGA-TCTTTCTCTGGCGTTCCGTA 397
|| || |||||||||| || || |||
Sbjct 388 GA-GAATCTTTCTCTGACGATCAGTA 412
> Ahg932542 jgi|Araly1|932542|scaffold_400530.1
Length=1435
Score = 121 bits (65), Expect = 2e-26
Identities = 115/139 (83%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 79 GTAGACTCAATCAGCGATCTACCCGACGCTGTTCTCCAACATATCTTCTCCTATATTCCG 138
||||||| ||| ||| | |||| || || | |||||||||||| |||||| |||||||
Sbjct 96 GTAGACTTAATAAGCTCTTTACCTGATTCTATCCTCCAACATATCCTCTCCTTTATTCCG 155
Query 139 A-CAGAGTTGGCGATCAGAACCTCTGTCTTGTCCAAACGATGGAGACATGTATGGTCCGA 197
| || |||| || |||||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 156 ACCA-AGTTAGCCATCAGAGCCTCCCTCTTGTCCAAACGATGGAGACATGTATGGTGCGA 214
Query 198 GACACCT-CATCTCTCCTT 215
| |||| | |||||||||
Sbjct 215 TATACCTTC-TCTCTCCTT 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52716899080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5