BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02950.1
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324953 jgi|Araly1|324953|fgenesh1_pm.C_scaffold_6000173 1594 0.0
> Ahg324953 jgi|Araly1|324953|fgenesh1_pm.C_scaffold_6000173
Length=1887
Score = 1594 bits (863), Expect = 0.0
Identities = 1064/1157 (92%), Gaps = 29/1157 (3%)
Strand=Plus/Plus
Query 172 ATGTCTACGGAACCAGAAGGAGTCGAATCTGACTCCAACGCTGATTTTGCCATAAATGCG 231
||||||||||||||||||||||||||||||||||| ||| |||||||| || | ||||||
Sbjct 1 ATGTCTACGGAACCAGAAGGAGTCGAATCTGACTCTAACACTGATTTTTCCGTGAATGCG 60
Query 232 TCGAGTTTTGACTACGGTA-TGGCTCACACATCTGAAACCCTAGCTGATCCCATGAGCTT 290
||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGAGGTTTGACAACGG-AGTGGCTCACACATCTGAAACCCTAGCTGATCCCATGAGCTT 119
Query 291 TCAAGCTCAGGACTTGGTAGTGAACCTCACTGGAGTTGAGCGAAAAGTATTTGTCTCTGC 350
||||||||| ||| |||||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 120 TCAAGCTCAAGACCTGGTAGTGAAGCTCACTGAAGTTGAGCGAAAAGGCTTTGTCTCTGC 179
Query 351 TCGTGATGATAAGGATAGTCTCTGTAACGGGGTTG---AT--T------T-T---GA--- 392
||||| ||||||||||||||||||||| ||||||| || | | | ||
Sbjct 180 TCGTGGTGATAAGGATAGTCTCTGTAATGGGGTTGATTATGATGCAGAATCTGGGGATTT 239
Query 393 TGCTGATTCAGATCTGCTTAAGAACAAGGATAAGAAAGGATTTT-CTAAAGAGAATCTGA 451
||||| ||||||||||||||||| |||||||||||| || |||| || | || |||||||
Sbjct 240 TGCTGGTTCAGATCTGCTTAAGAGCAAGGATAAGAATGG-TTTTGCTGATGAAAATCTGA 298
Query 452 AGCTTTTTGACTCAGATTTGGTTTGGGCTAAACTAAGAAGTTATCCATGGTGGCCTGGAC 511
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 299 AGCTTTTTGACTCAGATTTGGTTTGGGCTAAAATAAGAAGCTATCCATGGTGGCCTGGAC 358
Query 512 TGGTCTTTGATAAATCTGTTGCCTCTAAAGCTGCGATGAGGCACTTC---AAGAAAGGAA 568
||| |||||| ||||||||| ||||||||||||| || ||| ||| ||||||||||
Sbjct 359 AGGTGTTTGATGCATCTGTTGCATCTAAAGCTGCGAAGAAGCATTTCAAGAAGAAAGGAA 418
Query 569 ATGTCTTGGTTGCGTATTTTGGGGATTGTACATTTGCTTGGAATAATGCATCTCAGATAA 628
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 419 ATCTCTTGGTTGCGTATTTTGGGGATTGTACTTTTGCTTGGAATAATGCATCTCAGGTAA 478
Query 629 AGCCTTTTCATCAGAATTTCTCTCAAATGCAGGAGCAGAGTAACTCCGCTGAGTTTCGTG 688
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 479 AGCCTTTTCATCAGAATTTCTCTCAAATGCAGGAGCAGAGTAATTTGGCTGAGTTTCGTG 538
Query 689 ATGCTATTGATTGTGCTTTGGATGAGGTTTCAAGGAGAGTAGAGTTTGGTTTATCTTGCT 748
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 539 ATGCTATTGATTGTGCTTTGGATGAGGTTTCAAGGAGGGTAGAGTTTGGTTTATCTTGCT 598
Query 749 CTTGTGTTTCAGAGGAAGCCTATAACAAACTCAAGACTCAGAACATAATCAATGCTGGAA 808
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 CTTGTGTCTCAGTGGAAGCCTATAACAAACTCAAGACTCAGAACATAATCAATGCTGGAA 658
Query 809 TTCGTGAGGACTCAAGTGTTAGATACGGTGGAGACAAGTTATCGGATGGAATCTCTTTTG 868
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TTCGTGAGGACTCACGTGTTAGATACGGTGGAGACAAGTTATCGGATGCAATCTCTTTTG 718
Query 869 AACCTGCTAAACTTGTGGATTATATGAAGCATTTAGCTTGCTTTCCTTGCTATGATGCGA 928
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 719 AACCTGCGAAACTTGTGGATTATATGAAGCATTTAGCTTGCTTTCCTAGCTATGATGCGA 778
Query 929 CTGAGAAGCTGCAATTTGTGATTAACCGAGCTCAGGTATTGGCTTTTCAACAATGGAAAG 988
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 CTGCGAAGCTGCAATTTGTGATAAACCGAGCTCAGGTATTGGCTTTTCAACAATGGAAAG 838
Query 989 ACTATTCTCACTTCATTGACTATGAAACATTTGTAAGGTCGGTGGAATCTGCTGCGACCC 1048
||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 839 ACTATTCTCCCTTCATTGACTATGAAACATTTCTAAGGTCGGTAGAATCTGCTGCGACCT 898
Query 1049 TGGCTTCTCTCCCAGAAGTAAATATGGATGAAGGAATATCTGCCAAAAAGAGAAAGACAG 1108
| ||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 TAGCTTCTCTCCCGGAAGCAAATATGCATGAAGGAATATCTTTCAAAAAGAGAAAGACAT 958
Query 1109 ATTATAAAGATAATGCTGAACAGACAAAGGAG-AAGACTTTGTCAGATTTGACTGTAAAG 1167
|||| ||||||||||||||||||||||||||| ||| ||||||| ||||||| |||||||
Sbjct 959 ATTACAAAGATAATGCTGAACAGACAAAGGAGAAAG-CTTTGTCGGATTTGATTGTAAAG 1017
Query 1168 AAACGCTGTGGGAGCAGATCAACTGAGAAATTGGATGGTAAGTCGCATTCTGAAAAGAAG 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAACGCTGTGGGAGCAGATCAACTGAGAAATTGGATGGTAAGTCGCATTCTGAAAAGAAG 1077
Query 1228 CGTAAGGTTGAGTCTTCGGAATCTGGTAAGTCTGAGAAAAGGATCAAGAA-AAGTCAGCA 1286
|||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||
Sbjct 1078 CGTAAGGTTGAGTCTTCGGAATCTGGCAAGTCTGAGAAAAAGATCAAGAACAAC-CAGCA 1136
Query 1287 AAAGGAGGATTCAGTGT 1303
||| |||||||||||||
Sbjct 1137 AAAAGAGGATTCAGTGT 1153
Score = 1002 bits (542), Expect = 0.0
Identities = 690/757 (91%), Gaps = 27/757 (4%)
Strand=Plus/Plus
Query 1333 TCAGTGGGTGATACTAATAAACTGCAG-AAGACGGCTGAACCGTGTCATGGAACT-GGAG 1390
|||||| ||||| |||||||||||||| ||| ||||||||| ||||| |||| | |||
Sbjct 1147 TCAGTGTGTGATGCTAATAAACTGCAGAAAG-TGGCTGAACCATGTCACGGAA-TCAGAG 1204
Query 1391 TGGAAAATGAGATGAATTCTTTAACTCCTACACTTAAGCCTTGCCGTGCTTCTAAATCTA 1450
||||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||
Sbjct 1205 TGGAAAATGAGATGAATTCTTTAACTCCTGCACTTAAACCTTGCAGTGATTCTAAATCTA 1264
Query 1451 CGGAAGTTGAGAATGAGAAGACTAAGAAGCCGAGACATC-AAGAGCTTGCTGAAAGAAAG 1509
||||||||||||||||||| || ||||||||||||| | ||||||||||||||||||||
Sbjct 1265 CGGAAGTTGAGAATGAGAAAACGAAGAAGCCGAGAC-CCGAAGAGCTTGCTGAAAGAAAG 1323
Query 1510 ATTTCTTCTCCTGATGAGATGCTCTCAAGCCTTCACGCTGCCAATACCTCAAC-GGGAAT 1568
|||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||| |
Sbjct 1324 ATTTCTTCTCCTGATGAGATGCTCTCGAGCCTTCACGCTGCC---ACCCCAACAGGG-GT 1379
Query 1569 ACCTGATTCAATCA-ACATAGACCCCTCGAATTATGA-AGATTTTGAAAAGTTCATTAAT 1626
||| |||||||||| | |||||||||| ||| ||| | |||||||||| |||||||||||
Sbjct 1380 ACCCGATTCAATCAGA-ATAGACCCCTTGAACTAT-ATAGATTTTGAACAGTTCATTAAT 1437
Query 1627 GAACTGTTTTGCAGTAAACTCAATGGTGACTCAAAGAAGGCAAGTATCACTGAGACATCA 1686
||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1438 GAACTATCTTGCAGTAAACTCAATGATGACTCAAAGAAGGCAAGTATCACTGAAACATCA 1497
Query 1687 GAACCTTGTGAT-AAGAAAGACTCTGCAGAAGAAGAGATATTACCTGCAAATAAAGAAAT 1745
|||||||||| | || ||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1498 GAACCTTGTGTTCAA-AAAGACTCTGCAG-AG--GAGATCTTACCTGCAAATAAAGAAAT 1553
Query 1746 CACTGGCTCAGGCTCGAAAGAGCAAATTGGTCTCAAGGACTGTTCTGCAGATTCATTACC 1805
||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 1554 AACTGGCTCAGGCTCGAAAGAGCAAACTGGTCTCAAGGACTGTTCTGCAGATTCA-T--C 1610
Query 1806 ACCCTATGCTTTAGTCCTCAACTTTGCGGATTCAGGTTCGGTTCCATCTGAAGAAAAGCT 1865
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1611 ACCTTATGCGTTAGTCCTCAACTTTGCGGATTCAGGTTTGGTTCCATCTGAAGAAAAGCT 1670
Query 1866 GAACGAGATATTTAAACGTTACGGTCCTCTCCATGAGTCTAAGACTAAGGTCACGATGAA 1925
||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||
Sbjct 1671 GAACGAGATATTTAACCGTTATGGTCCTCTCCATGAGTCGAAGACTAAGGTCACGAAGAA 1730
Query 1926 GGGTAAGAGAGCCAAAGTTGTGTTCAAAAGAGGGGAAGACGCAAAGACTGCCTTTAGCAG 1985
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1731 GGGCAAGAGAGCCAAAGTTGTGTTCAAAAGAGGCGAAGACGCAAAGACTGCCTTCAGCAG 1790
Query 1986 CGCAGGGAAATACAGCATCTTTGGACCTTCTCTTCTAAGTTACAGACTCGAGTATGTTTG 2045
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 CGCGGGGAAATACAGCATCTTTGGACCTTCTCTTCTAAGTTACAGACTCGAGTATGTTTG 1850
Query 2046 CCCCAAA-CGGaaaa-a--aaCAACATGACTGATTGA 2078
||||||| || |||| | ||||||||||||||||||
Sbjct 1851 CCCCAAAGCGAAAAAGAGCAACAACATGACTGATTGA 1887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83912809735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5