BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02960.1
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487072 jgi|Araly1|487072|fgenesh2_kg.6__206__AT5G02960.1 1016 0.0
Ahg478290 jgi|Araly1|478290|fgenesh2_kg.3__991__AT3G09680.1 580 4e-165
> Ahg487072 jgi|Araly1|487072|fgenesh2_kg.6__206__AT5G02960.1
Length=640
Score = 1016 bits (550), Expect = 0.0
Identities = 615/645 (95%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 1 ATATTAAGAGTCACTGCCTTCACTAGGTTTAGGGTTTTCTCAGCCGCTTAAGAGCTTATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATATTAAGAGTCACTGCCTTCACTAGGTTTAGGGTTTTCTCAGCCGCTTAAGAGC-TATC 59
Query 61 ATCTTTGTGCTTCCTGCAAATAGCTCTTTGCTGTTGATCTTTCTCCTCCATCAACAAACA 120
|||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 ATCTCTGTGCTTCCTCCAGATACCTCTTTGCTGTTGATCTTTCTCCTCCATCAACAAACA 119
Query 121 TGGGTAAGACACGTGGTATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATTAACCAGA 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 120 TGGGTAAGACACGTGGAATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATCAACCAGA 179
Query 181 GGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAATGAGTGGAAGAAGCCTTTTG 240
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 180 GGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAACGAATGGAAGAAGCCTTTTG 239
Query 241 CTGGTTCTTCTCACGCTAAAGGAATTGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAGC 300
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 240 CTGGTTCTTCTCACGCTAAAGGAATTGTCCTTGAGAAAATCGGTATTGAGGCTAAGCAGC 299
Query 301 CTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTTATCAAGAATGGAAAGAAGATTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTTATCAAGAATGGAAAGAAGATTG 359
Query 361 CTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATCGAGGAAAACGATGAGGTCTTGA 420
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 360 CTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATGAGGTGTTGA 419
Query 421 TTGCTGGATTTGGTCGTAAGGGTCACGCTGTGGGAGATATTCCCGGAGTTAGGTTCAAGG 480
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 420 TTGCTGGATTTGGTCGTAAGGGTCATGCTGTGGGAGATATTCCCGGAGTCAGGTTCAAGG 479
Query 481 TCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGCCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGCCAA 539
Query 541 GATCTTAAGCAACCCGTACAAAAAGCTTCAAGCTTTTG-ATATGGTTTTTGATAGTTCAG 599
|||||||| |||||| |||||| ||||||||||| || | |||| ||||||||||||||
Sbjct 540 GATCTTAAACAACCCATACAAA--GCTTCAAGCTTGTGGA-ATGGATTTTGATAGTTCAG 596
Query 600 TTTAAG-TCTT-GTTCTGTTCTACTTTATG-TTTCAAGAACTTGA 641
||||| |||| |||||||||||||||| | ||| ||||||||||
Sbjct 597 TTTAAACTCTTTGTTCTGTTCTACTTTAAGATTT-AAGAACTTGA 640
> Ahg478290 jgi|Araly1|478290|fgenesh2_kg.3__991__AT3G09680.1
Length=508
Score = 580 bits (314), Expect = 4e-165
Identities = 394/433 (91%), Gaps = 4/433 (1%)
Strand=Plus/Plus
Query 120 ATGGGTAAGACACGTGGTATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATTAACCAG 179
||||||||| |||||||||||||||||||||| ||||||||| | ||||| ||||| |||
Sbjct 70 ATGGGTAAGCCACGTGGTATGGGAGCTGGGCGCAAGCTGAAGCGGCTCCGGATTAATCAG 129
Query 180 AGGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAATGAGTGGAAGAAGCCTTTT 239
| |||||| |||||| | ||||||||||||| | || || ||||||||||||||||||
Sbjct 130 AAGTGGGCCGACAAGTATTACAAGAAGTCTCGCCAAGGCAACGAGTGGAAGAAGCCTTTT 189
Query 240 GCTGGTTCTTCTCACGCTAAAGGAATTGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAG 299
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 190 GCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAG 249
Query 300 CCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTT-ATCAAGAATGG-AAAGAAGA 357
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 250 CCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAG-TTGATCAAGAATGGTAAA-AAGA 307
Query 358 TTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATCGAGGAAAACGATGAGGTCT 417
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 308 TTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATGAGGTGT 367
Query 418 TGATTGCTGGATTTGGTCGTAAGGGTCACGCTGTGGGAGATATTCCCGGAGTTAGGTTCA 477
|||||||||||||||| ||||| ||||| || || || ||||||||||||||||||||||
Sbjct 368 TGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGTGATATTCCCGGAGTTAGGTTCA 427
Query 478 AGGTCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGC 537
| || |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 428 AAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAGGAGAAGC 487
Query 538 CAAGATCTTAAGC 550
| || |||| |||
Sbjct 488 CTAGGTCTTGAGC 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27600991908
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5