BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02970.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1 3003 0.0
Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1 1158 0.0
> Ahg487073 jgi|Araly1|487073|fgenesh2_kg.6__207__AT5G02970.1
Length=1954
Score = 3003 bits (1626), Expect = 0.0
Identities = 1862/1973 (94%), Gaps = 28/1973 (1%)
Strand=Plus/Plus
Query 16 AAAGCTCCAGAACCTCGTCAATGGCGGACTGGGATTTTTCA--TAAAGCCAGTCAAATCC 73
|||||||||||| |||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1 AAAGCTCCAGAATCTCGTCAATGGCGGACTGGGTTTTTTCACCT-TAGCCAGTCAAATCA 59
Query 74 AGGAGGCGATGGAGAATATTGAAAAAGACGAACGTGACaaaaaaaaGTTTAGCTGAAGAA 133
|||||||||| | | | | | | || ||| ||||||||||||||||||||||
Sbjct 60 AGGAGGCGAT-G-G---A-T-----A-A-TAA--TGA-AAAAAAAAGTTTAGCTGAAGAA 103
Query 134 TAAATTGAAGATTCGAATCAAACCATTAGTCTTGTGTCGAAGCTGTTTCTACGTCATTTG 193
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 104 TAAATTGAAGATTTGAATCAAACCATTAGTCTTGTGTCTAAGCTGTTTCTACGTCATTTG 163
Query 194 GTTTTGCTGTGAAGAGTTGGTTCGGGTTTAGGTTCGGATTGGGAAGATGGAGGAGATTAG 253
|||||||||||||| |||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 164 GTTTTGCTGTGAAGTGTTGGTTCGGATTTAGGTTCGGATAGGGAAGATGGAAGAGATTAG 223
Query 254 AGGAGTGCCTACGTGGCAGGAAGAGTTAGCGAGCCTAGTTGACGCCGGATTACGATACGA 313
||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||
Sbjct 224 AGGAGTGCCTACGTGGCAGGAGGAGTTAGCGAGTCTCGTCGACGCCGGATTACGATACGA 283
Query 314 CGGAGCACCGATCGATTTAACGGCGGCTACAAAGAGATCGGGTTTTGTGTCGGCGGATGG 373
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CGGAGCTCCGATCGATTTAACGGCGGCTACAAAGAGATCGGGTTTTGTGTCGGCGGATGG 343
Query 374 ATCCGGATCCGAACCGAAGGAGACATTGAAAGATCAAGTGACGGGATTCATGAAATCGTG 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 344 ATCCGGATCCGAACCGAAGGAGACATTGAAAGATCAAGTGACGGGATTCATGAAATCTTG 403
Query 434 GGGAGAGATGCTTCTTGAGCTCGCGAAAGGATGCAAGGACATTGTGCAGCAGACGGTGGT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GGGAGAGATGCTTCTTGAGCTCGCGAAAGGATGCAAGGACATTGTGCAGCAGACGGTGGT 463
Query 494 CACTGATGACTCATTCCTAGTACGGAAGCTCCGGAAACCGGCGGCTAAAGTGTCGAAGAA 553
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 464 GACTGATGACTCATTCGTAGTACGGAAGCTCGGGAAACCGGCGGCTAAAGTGTCGAAGAA 523
Query 554 GCTTAGCTTTCTAAACGAGTTCTTGCCTGAGGATCGTGATCCCATTCACGCTTGGCCTGT 613
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 524 GCTTAGCTTTCTAAACGAGTTCTTGCCTGAAGATCGTGATCCGATTCACGCTTGGCCTGT 583
Query 614 GATTTTCTTCGTCTTCCTCTTAGCACTCGCAGCATTAAGCTTTAGTCCAGAGAACGATAG 673
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 584 GATTTTCTTCGTCTTCCTCTTAGCACTCGCAGCTTTAAGCTTTAGTCCAGAGCATGATAG 643
Query 674 ACCAGTGACGGTTATAACGAAACTGCGTTTACATCCTACCGGTGCTACACGTGTACAGCT 733
|||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 644 ACCAGTGACGGTGGTAAAGAAACTGCGTTTACATCCTACAAGTGCTTCACGTGTACAGCT 703
Query 734 TCCAGATGGTAGATATATAGCTTACCAAGAGCTAGGTGTTTCAGCAGAAAGAGCAAGATA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TCCAGATGGTAGATATATAGCTTACCAAGAGCTAGGTGTTTCAGCAGAAAGAGCAAGATA 763
Query 794 CTCTTTAGTTATGCCTCATTCTTTTCTTTCCTCTCGACTTGCAGGCATACCTGGAGTGAA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CTCTTTAGTTATGCCTCATTCTTTTCTTTCCTCTCGACTTGCAGGCATACCTGGAGTGAA 823
Query 854 GAAGTCATTG-TTGGTGGAGTATGGTGTCCGTTTAGTGTCATATGATCTTCCAGGGTTTG 912
||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GAAATCATTGCTTG-TGGAGTATGGTGTCCGTTTAGTGTCATATGATCTTCCAGGGTTTG 882
Query 913 GAGAGAGTGATCCTCATCGAGGTCGAAATCTTAGCTCATCAGCCTCAGATATGATTAACC 972
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 883 GAGAGAGTGATCCTCATCGAGGTCGAAACCTTAGCTCATCAGCCTCAGATATGATTAACC 942
Query 973 TAGCAGCTGCTATTGGAATTGATGAGAAATTTTGGTTACTTGGCTACTCTACTGGTAGTA 1032
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 943 TAGCAGCTGCTATCGGAATTGATGAGAAATTCTGGTTACTTGGCTACTCTACTGGTAGTA 1002
Query 1033 TTCATACATGGGCTGGAATGAAATATTTTCCTGAGAAAATTGCAGGAGCTGCAATGGTGG 1092
| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1003 TGCATACATGGGCTGCAATGAAATATTTCCCTGAGAAAATTGCAGGAGCTGCAATGGTGG 1062
Query 1093 CTCCCGTGATCAATCCATATGAGCCAAGCATGGTTAAAGAAGAGGTGGTAAAAACATGGG 1152
|||| |||||||| || |||||||||||||||| || |||||| |||||||||||||||
Sbjct 1063 CTCCGGTGATCAACCCCTATGAGCCAAGCATGGCCAAGGAAGAGATGGTAAAAACATGGG 1122
Query 1153 AGCAATGGCTAACAAAGAGGAAATTCATGTACTTTTTAGCTCGGCGGTTTCCAATTCTTC 1212
| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1123 ACCAATGGCTAACAAAGAGGAAATTCATGTACTTTTTAGCACGGCGGTTTCCTATTCTTC 1182
Query 1213 TGCCTTTCTTCTACCGTAGATCTTTTCTCTCTGGTAACCTCGATCAGCTCGATCAGTGGA 1272
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1183 TTCCTTTCTTCTACCGTAGATCTTTTCTCTCTGGTAAACTCGATCAGCTCGATCAGTGGA 1242
Query 1273 TGGCATTGTCATTAGGAGAAAAGGATAAACTTTTAATCAAAGATCCAACGTTTCAAGAAG 1332
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1243 TGTCATTGTCATTAGGAGAAAAGGATAAACTTCTAATCAAAGATCCAACGTTTCAAGAAT 1302
Query 1333 TTTATCAAAGGAACGTGGAGGAATCAGTCCGTCAAGGAATCACAAAACCATTTGTAGAAG 1392
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1303 TTTACCAAAGGAACGTGGAGGAATCCGTCCGTCAAGGAATCACAAAACCATTTGTAGAAG 1362
Query 1393 AAGCCGTGCTTCAAGTATCGAATTGGGGCTTTACTCTTTCGGAATTCCGCACACAGAAGA 1452
|| || ||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1363 AATCCATGCTTCAAGTATCGAATTGGGGCTTTACTCTCTCCGAATTCCGCACACAGAAGA 1422
Query 1453 AATGTGCAACCAACGGTGTCCTTTCTTGGCTCATGTCAATGTACAGTGAAGCCGAATGTG 1512
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1423 AATGTACAACCAACGGTGTCCTTTCTTGGCTCATGTCAATGTACAGTGAAGCTGAATGTG 1482
Query 1513 AACTAATCGGATTTCGAAAACCCATTCACATATGGCAGGGAATGGAGGATCGAGTGGCTC 1572
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1483 AACTAATAGGATTTCGAAAACCCATTCACATATGGCAGGGAATGGAGGATCGAGTGGCGC 1542
Query 1573 CACCATCAATGAGTGACTACATTAGCAGAATGATTCCTGAAGCAACTGTACATAAGATTC 1632
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1543 CACCATCAATGAGTGACTACATCAGCAGAATGATTCCTGAAGCAACTGTACATAGGATTC 1602
Query 1633 GAAACGAAGGTCACTTCTCGTTCTTCTATTTCTGCGATGAGTGCCATAGACAGATCTTCT 1692
||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1603 AAAACGAAGGTCACTTCTCGTTCTTCTATTCCTGCGATGAGTGCCACAGACAGATTTTCT 1662
Query 1693 ATGCTTTGTTTGGAGAACCCAAAGGCCAGCTTGAAAGAGTAAAAGAAACAGAGGACACTG 1752
||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1663 ATGCTTTATTCGGAGAACCCAAAGGCCAGCTTGAAAGAGTAAAAGAAACAAAGGATACTC 1722
Query 1753 TAGTGGAAACAGAGGCACATAAGGACACTTA---GTACTAATACAACCACCaaaaaaaga 1809
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1723 TAGTGGAAACAGAGGCACATAAGGACACTTATTAGTACTAATACAACCACCAAAAAAAAA 1782
Query 1810 gtaaagaagtaaaaaaggaaa---ggtgaaaattagctatagctagaaaatcaaaaaCTA 1866
|||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 1783 GTAAAGAAGTAAAAAAAAAAAAAAGGTGGAAATTAGCTATAGCTAGAAAATCAAAAACTA 1842
Query 1867 GATAttttttgtttcatattttttAGGGGTTACACCAAGCAGAATTTTATACTAGATGGC 1926
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1843 GATATTTTTTGTTTCAGATTTTATAGGG-TTACACCAAGCAGAATTTTATACTAGATGGC 1901
Query 1927 ATTTTACATTCCTAAAGATGATTTATCAATGGTTTTATTAGATAAGTGAGCTA 1979
||||||||| |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1902 ATTTTACATCCCTAAAGATGATTTATCAATGGTTATATTAAATAAGTGAGCTA 1954
> Ahg478291 jgi|Araly1|478291|fgenesh2_kg.3__992__AT3G09690.1
Length=1835
Score = 1158 bits (627), Expect = 0.0
Identities = 1219/1502 (81%), Gaps = 51/1502 (3%)
Strand=Plus/Plus
Query 240 ATGGAGGAGAT---TAGAGGAGTGCCTACGTGGCAGGAAGAGTTAGCGAGCCT-AGTTGA 295
||||||||||| |||||||||||||||||||| || |||||||| || || | | ||
Sbjct 175 ATGGAGGAGATGCCAAGAGGAGTGCCTACGTGGCAAGACGAGTTAGCTAGTCTCA-TGGA 233
Query 296 CGCCGGAT-TACGATACGACGGAGCACCGATCGATTTAACGGCGGCTAC--AA--AGAGA 350
|| || | ||| |||||||||| | ||||| ||| | ||||||| ||| || | ||
Sbjct 234 CGGAGG-TGTACAATACGACGGATCTCCGATTGATCTGACGGCGGATACTGAATCA-AGG 291
Query 351 TC---GGGTT-TTGTGTCGGCGGATGGATCCGGATCCGAA-CCGAAGGAGACATTGAAAG 405
|| | ||| || |||| | || || ||||||||| | | ||||| ||||| |
Sbjct 292 TCAAAGAGTTCGGGTTTCGG-GTCGGGTTCTGGATCCGAATCAG-TGGAGAGTTTGAAGG 349
Query 406 ATCAAGTGACGGGATTCATGAAATCGTGGGGAGAGATGCTTCTT-GAGCTCGCGAA-AGG 463
||||||||||||| || || || || |||||||| |||||| || || ||||| || ||
Sbjct 350 ATCAAGTGACGGGGTTTATCAAGTCTTGGGGAGAAATGCTT-TTGGATCTCGC-AATCGG 407
Query 464 ATGCAAGGACATTGTGCAGCAGACGGTGGTCACTGATGACTCATTCCTAGTACGGAAGCT 523
|||||| ||| |||||||||||| |||||| || || ||||| ||| | || || |||||
Sbjct 408 ATGCAAAGACGTTGTGCAGCAGATGGTGGTGACGGAAGACTCTTTCGTTGTGCGTAAGCT 467
Query 524 CCGGAAACCGGCGGCTAAAGTGTCGAAGAAGCTTAGCTTTCTAAACGAGTTCTTGCCTGA 583
||||||||| || ||||| || || |||||||||||||| || ||||| | |||||||||
Sbjct 468 CCGGAAACCAGCTGCTAAGGTTTCTAAGAAGCTTAGCTTCCTTAACGACTACTTGCCTGA 527
Query 584 GGATCGTGATCCCATTCACGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAGCACTCGC 643
|||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 528 GGATCGTGATCCTGTTCATGCTTGGCCTGTGATTTTCTTCGTCTTCCTCTTAGCTCTCAC 587
Query 644 AGCATTAAGCTTTAGTCCAGAGAACGATAGACCAGTGAC-G-GTTATAACGAAACTGCGT 701
|||||| || |||||| |||| | |||||| | || | | ||| || |||| | |||
Sbjct 588 AGCATTGAGTTTTAGTTCAGACCATGATAGATCTGTCCCAGTGTT-GAA-GAAAATCCGT 645
Query 702 TTACATCCTACCGGTGCTA-CACGTGTACAGCTTCCAGATGGTAGATATATAGCTTACCA 760
| ||||||||| |||| | | ||||||| ||||||||||||||||||| ||||||||||
Sbjct 646 CTGCATCCTACCAGTGCAAGC-CGTGTACTGCTTCCAGATGGTAGATATTTAGCTTACCA 704
Query 761 AGAGCTAGGTGTTTCAGCAGAAAGAGCAAGATACTCTTTAGTTATGCCTCATTCTTTTCT 820
||||| ||||||||||| || ||||| ||| ||||| || || | ||||||||||||||
Sbjct 705 GGAGCTTGGTGTTTCAGCTGACAGAGCTAGACACTCTCTAATTGTTCCTCATTCTTTTCT 764
Query 821 TTCCTCTCGACTTGCAGGCATACCTGGAGT-GAAGAAGTCATTGTTGGTGGAGTATGGTG 879
||||||||| |||||||| ||||| ||||| ||||| |||||| | ||| |||||||
Sbjct 765 TTCCTCTCGGCTTGCAGGTATACCCGGAGTAAAAGAA-TCATTGCTCAAGGACTATGGTG 823
Query 880 TCCGTTTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCTCATCGAGGTCGAA 939
||||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 824 TCCGTCTAGTGTCATATGATCTTCCAGGGTTTGGAGAGAGTGATCCCCATCGTGCTCGGA 883
Query 940 ATCTTAGCTCATCAGCCTCAGATATGATTAACCTAGCAGCTGCTATTGGAATTGATGAGA 999
| ||||||||||||||||| ||||||||| || |||| |||||| | || |||| ||| |
Sbjct 884 ACCTTAGCTCATCAGCCTCGGATATGATTGACTTAGCTGCTGCTCTCGGGATTGTTGACA 943
Query 1000 AATTTTGGTTACTTGGCTACTCTACTGGTAGTATTCATA-CATGGGCTGGAATGAAATAT 1058
| || |||||||||||||| || | ||||||| | ||| | ||||||| ||||| |||
Sbjct 944 AGTTCTGGTTACTTGGCTATTCCAGTGGTAGTGTGCATGTC-TGGGCTGCAATGAGATAC 1002
Query 1059 TTTCCTGAGAAAATTGCAGGAGCTGCAATGGTGGCTCCCGTGATCAATCCATATGAGCCA 1118
||||| || | || || |||| ||| ||||| || || ||||||||||||||||||||
Sbjct 1003 TTTCCGGACCAGATAGCTGGAGTTGCCATGGTAGCACCTATGATCAATCCATATGAGCCA 1062
Query 1119 AGCATGGTTAAAG-AAGAGGTGGTAAAAACATGGGAGCAATGGCTAAC-AAAGAGGAAAT 1176
|||||| |||| ||||| | | |||||| |||||||| |||| ||| ||||||||| |
Sbjct 1063 AGCATGAC-AAAGGAAGAGATTGCAAAAACGTGGGAGCAGTGGC-AACGAAAGAGGAAGT 1120
Query 1177 TCATGTACTTTTTAGCTCGGCGGTTTCCAATTCTTCTGCCTTTCTTCTACCGTAGATCTT 1236
|||||||||||||||| || |||| |||| |||||| ||||||| ||| || || || |
Sbjct 1121 TCATGTACTTTTTAGCACGTCGGTGGCCAAGTCTTCTTCCTTTCTCCTATCGCAGGTCCT 1180
Query 1237 TTCTCTCTGGTAACCTCGATCAGCTCGATCAGTGGATGGCATTGTCATTAGGAGAAAAGG 1296
||||||| ||||| ||||| | ||| ||| |||||||| || ||||||||||||||||||
Sbjct 1181 TTCTCTCCGGTAATCTCGAGCCGCTGGATAAGTGGATGTCAATGTCATTAGGAGAAAAGG 1240
Query 1297 ATAAACTTTTAATCAAAGATCCAACGTTTCAAGAAGTTTATCAAAGGAACGTGGAGGAAT 1356
| |||||| |||||| ||||||| ||| |||| |||| ||||||||||||||||| |
Sbjct 1241 ACAAACTTGTAATCACAGATCCAGTTTTTGAAGATCTTTACCAAAGGAACGTGGAGGAGT 1300
Query 1357 CAGTCCGTCAAGGAA-TCACAAAACCATTTGTAGAAGAAGCCGTGCTT-CAAGTATCGAA 1414
| || || ||||||| | ||||||||||||| |||||||||| | || || || || ||
Sbjct 1301 CTGTACGGCAAGGAACTG-CAAAACCATTTGTCGAAGAAGCCGGG-TTACAGGTCTCAAA 1358
Query 1415 TTGGGGCTTTACTCTTTCGGAATTCCGCACACAGAAGAAATGT-GCAACCAACGGTGTCC 1473
||||||||||| |||| | ||||||| || |||||||| ||| | |||||| || ||||
Sbjct 1359 TTGGGGCTTTAGTCTTCCTGAATTCCACATGCAGAAGAAGTGTAG-AACCAATGGCGTCC 1417
Query 1474 TTTCTTGGCTCATGTCAATGTACAGTGAAGCCGAATGTGAACTAATCGGATTTCGAAAAC 1533
| |||||||| |||||||||||||| ||| ||||||||||||| || || || || ||||
Sbjct 1418 TCTCTTGGCTAATGTCAATGTACAGCGAATCCGAATGTGAACTTATTGGGTTCCGGAAAC 1477
Query 1534 CCATTCACATATGGCAGGGAATGGAGGATCGAGTG-GCTCCACCATCAATGAGTGACTAC 1592
|| | |||||||||||||| ||||| || ||||| | |||||| ||| ||| ||| |||
Sbjct 1478 CCGTACACATATGGCAGGGTATGGACGACCGAGTCAG-TCCACCTTCAGTGACTGATTAC 1536
Query 1593 ATTAGCAGAATGATTCCTGAAGCAACTGTACATAAGATTCG-AAACGAAGGTCACTTCTC 1651
|||||| | | || || |||||| ||||||||| || || ||||||||| ||||||||
Sbjct 1537 ATTAGCCGGGTCATACCAGAAGCATCTGTACATA-GACTCCCAAACGAAGGCCACTTCTC 1595
Query 1652 GTT-CTTCTATTTCTGCGATGAGTGCCATA-GACAGATCTTCTATGCTTTGTTTGGAGAA 1709
|| |||||||||||| ||||||||||| | | |||||||| | || | |||||||||
Sbjct 1596 -TTACTTCTATTTCTGTGATGAGTGCCACAAG-CAGATCTTTTCGGCCATATTTGGAGAA 1653
Query 1710 CC 1711
||
Sbjct 1654 CC 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5