BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G02980.1
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487074 jgi|Araly1|487074|fgenesh2_kg.6__208__AT5G02980.1 1133 0.0
Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177 294 7e-79
Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182 119 5e-26
Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890 111 8e-24
Ahg931328 jgi|Araly1|931328|scaffold_303785.1 104 1e-21
> Ahg487074 jgi|Araly1|487074|fgenesh2_kg.6__208__AT5G02980.1
Length=1029
Score = 1133 bits (613), Expect = 0.0
Identities = 916/1051 (87%), Gaps = 65/1051 (6%)
Strand=Plus/Plus
Query 1 ATGAATGAATCATCAGA-G-T-CTCCTCCTCCTTCT----CGTACGTTTTCTTCGTTACC 53
||||| ||||||||||| | | ||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGAAGGAATCATCAGAGGCTGATCCTCCTCCTTCTCCGACGT-CGTTTTCTTCGTTACC 59
Query 54 ATACGACATCATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCAACTCTATC 113
|||||||||||| ||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 60 ATACGACATCATTCTCAACTGTTTGGCTCGTGTCTCGAGATTCCACTATCCAACTCTATC 119
Query 114 TCTCGTCTCCAAGGAG-TTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGAT 172
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTCGTCTCCAAGG-GTTTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGAT 178
Query 173 CCCGCATCGGAAAAACCGAGAGGTTCCTCTATATCTGCTTAAACCTGACTAAGAGC-A-A 230
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 179 CCCGCATCGGAAAAACCGAGAGTTTCCTCTATATCTGCTTAAACCTGACTAAGAACCACA 238
Query 231 -CCCTAAGTATCGCTGGTTCACACTTCCCCCAGTTCCCAACGAACAA-AAACTACTACCC 288
|||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||
Sbjct 239 ACCCTAAGTATCGCTGGTTCACACTTCCCCCAGTTCCCAAC-AACCAGAAATTACTACCC 297
Query 289 GTCCCTTTGTTTACTTATCATCTCAATTCCTCAACCGTC-TCCTCAACTGATTCAGAGAT 347
||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 298 ATCCCTTTGTTTCCTTATCATCTCAATTCCTCAACCGTCATC-TCAACTGGTTCAGAGAT 356
Query 348 TTACATAATCGGAGGCCTCGTTTGGGGAAATAGAAGCAAGAAAGCGTCCATTTTTGACTG 407
||||| ||||||||||||| ||||||||||||||| ||||| | ||| ||||||| ||
Sbjct 357 TTACAGAATCGGAGGCCTCCTTTGGGGAAATAGAAACAAGAGCGTGTCGGTTTTTGATTG 416
Query 408 TCGATCTCATCAAACGCGTAGACTCCCAAAAATGCGTTTTCCTCGAGCTTCTGCTGCCGC 467
||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 417 TCGATCTAATCAATCGCGTAGACTCCCAAAAATGCGTCTACCTCGAGCTTCTGCTGCCGC 476
Query 468 TCATGTCATTGACGGTAAGATCTATGTTATTGGAGGCGGCGAG-A---T--TCG---G-- 516
||||||||||||||||||||||||||||||||||||| | || | | | | |
Sbjct 477 TCATGTCATTGACGGTAAGATCTATGTTATTGGAGGCTACAAGTACAATGATAGCCAGAA 536
Query 517 ----GGAGAGGTTTATGACCCAACGACCCAAACTTGG---C---T----C--ACAACACC 560
||||||||||||||||||| ||||||||||||| | | | ||||||||
Sbjct 537 CCAAGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCCAATATTGCTCACAACACC 596
Query 561 AGTAGATCACACCACTGAAGAGTGTCAAAAAGTTTATGACAAGCATGGCGTGAATATTTG 620
| |||||| ||||||| ||| ||||| |||||||||||||| ||||||| ||||||||||
Sbjct 597 ACTAGATCTCACCACTCAAGTGTGTCGAAAAGTTTATGACAGGCATGGCATGAATATTTG 656
Query 621 CTTTGTAGAGATAGACAACTTGCTGTGCCAAACATTTGTATTCAACGGGAAGCTATATTG 680
|||||||||||||||||||||| ||||||||| || ||||| | ||||||||||| ||||
Sbjct 657 CTTTGTAGAGATAGACAACTTGTTGTGCCAAATATCTGTATCCGACGGGAAGCTAAATTG 716
Query 681 GCGTCATCCAAGGGGAGATGATTTTGGCTGGGCTAGGGTTAAGGGAGTGGAACAGGAACT 740
|||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||
Sbjct 717 GCGTCATCCAAGGGGAGATGATATTGGCTGGGCTAGGGTTAAGAGACTTGAACAGGAACG 776
Query 741 CTTCCGTAATCATCTT-TCTTATGTGGACAAATCCGGCGGAGGAAGAAGAGTGACAGTGT 799
|||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 777 CTTCGGTAATCATCTTGT-TTATGTGGAAAAATCCGGCGGAGGAAGAAGAGTGACAGTGT 835
Query 800 GGTGGAAGTCTGTGGTGGTGTTTGGCTGTCAAGGTCTTGGCTATTCTACGGAATTTGATA 859
||||||| ||||||||| | || || | || || | ||| ||||| ||| |
Sbjct 836 GGTGGAACTCTGTGGTG-T-TTCA-CT---A---TC--GG-T---CTAGGGAATATGAAA 880
Query 860 CAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAAAAGAGCTTTGGGGAT 919
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 881 CAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACACGGTTTAGAAGAGGTTTGGGGAT 940
Query 920 TTGTAGAATGGTCTAGAAAAGTGTTCACATGTAA-GGGATGTGATTCTCCTACGGATTTT 978
|||| |||||||||| ||||||||| |||| ||| ||| ||||| ||||||||| ||||
Sbjct 941 TTGTTGAATGGTCTAAAAAAGTGTTTACATTTAATGGG-TGTGACTCTCCTACGAATTTC 999
Query 979 GTTATGGATTCTGTCC-TTGTGACATATTGA 1008
||||||||||||| || ||||||| | ||||
Sbjct 1000 GTTATGGATTCTG-CCATTGTGACCTGTTGA 1029
> Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177
Length=1062
Score = 294 bits (159), Expect = 7e-79
Identities = 370/470 (79%), Gaps = 21/470 (4%)
Strand=Plus/Plus
Query 46 TCGTTACCATACGACATCATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCA 105
|||||||| |||| ||||| |||||||||||||||||||||||||||| | || |||
Sbjct 124 TCGTTACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCGTCCA 183
Query 106 ACTCTATCTCTCG-TCTCCAAGGAGTTCCAATCTCTCATCGCCTC-CCGTGAGCTCTACG 163
|||||| || | || |||||| ||||||||||||||||| || || ||| ||| | |
Sbjct 184 TGTCTATC-CTTGGTCAACAAGGATTTCCAATCTCTCATCGCTTCTCC-TGATCTCGAGG 241
Query 164 CTACACGATCCCGCATCGGAAAAACCGAGAGGTTCCTCTATATCTGCTTAAAC-CTGACT 222
| || |||||||| |||||| ||| |||| || ||| ||| |||||||| | | || |
Sbjct 242 CCACGCGATCCCGAATCGGAGTAACAGAGAAGTACCTTTATGTCTGCTTAGAGTC-GAAT 300
Query 223 AAGAGCAACCCTAAGTA-TCGCTGGTTCACACTTCCCCCAGTTCCCAA-CGAACAAAAAC 280
|||| ||||||||| | |||||||||||||||| | ||| ||||||| | |||| ||||
Sbjct 301 AAGAACAACCCTAA-TCCTCGCTGGTTCACACTTGCACCAATTCCCAAAC-AACAGAAAC 358
Query 281 T-ACTACCCGTCCCTTTGTTTACTTATC-A--TCTCA-ATTCCTCAACCGTC-TCCTCAA 334
| | ||| ||||||| ||| |||||| | || || || | ||||| || || || |
Sbjct 359 TGAA-ACCTATCCCTTTATTTCCTTATCGACATCCCACAT-CATCAACTGTTGTC-TCTA 415
Query 335 CTGATTCAGAGATTTACATAATCGGAGGCCTCGTTTGGGGAAATAGAAGCAAGAAAGCGT 394
|| ||||||||||||||| ||||||||| ||||| ||||| |||||| ||| || ||
Sbjct 416 TTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGAAGGAGAAGCCAGAGAGTGT 475
Query 395 CCATTTTTGACTGTCGATCTCATCAAACG-CGTAGACTCCCAAAAATGCGTTTTCCTCGA 453
|| | || ||||||||||||||| | ||||||||||| || |||| | ||||||
Sbjct 476 TGGTTCTAGATTGTCGATCTCATCAAT-GTCGTAGACTCCCCAACATGCATCAACCTCGA 534
Query 454 GCTTCTGCTGCCGCTCATGTCATTGACGGTAAGATCTATGTTATTGGAGG 503
| |||||| |||| | ||||||| |||||||||||||| || ||||||||
Sbjct 535 GTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGG 584
> Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182
Length=1011
Score = 119 bits (64), Expect = 5e-26
Identities = 134/166 (81%), Gaps = 12/166 (7%)
Strand=Plus/Plus
Query 849 GGAATTTGATACAG-AGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAAAAG 907
||||| ||| || | |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 852 GGAATGTGAAAC-GAAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAACAG 910
Query 908 AGCTTTGGGGATTTGTAGAATGGTCTAGAAAAG-TGTTCACATGTA-AGGGATGTGATTC 965
||||||||||||| || || ||||||| || || |||| | || | |||| ||| ||
Sbjct 911 AGCTTTGGGGATTCGTTGATTGGTCTA-AAGAGGTGTTTGCC-GTTGATGGATATGACTC 968
Query 966 TCCT-ACGGATTT-TGTTATGGATTCTG-TCCTTGTGACATATTGA 1008
| || ||| |||| | || | |||||| | ||||||| ||||||
Sbjct 969 TACTTACG-ATTTCTTTT-TAAATTCTGCTA-TTGTGACTTATTGA 1011
> Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890
Length=1017
Score = 111 bits (60), Expect = 8e-24
Identities = 275/372 (74%), Gaps = 41/372 (11%)
Strand=Plus/Plus
Query 8 AATCATCAGAGTCTCCTCCTC---CTTC-TCGTACGTTTTCTTCGTTACCATACGACATC 63
||||| ||||||||||||||| || | || |||||||||||||| || || ||| ||
Sbjct 77 AATCACCAGAGTCTCCTCCTCAGACTCCGACG-ACGTTTTCTTCGTTGCCGTATGACCTC 135
Query 64 -ATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCAACTCTATCTCTCGTCTC 122
| |||||||||||||||||||||||||||| | || | || | |||||
Sbjct 136 GCT-CTCAATTGTTTGGCTCGTGTCTCGAGATTCTAT--C--AA-TG--------GTCTC 181
Query 123 CAAGGAGTTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGATCCCGCATCGG 182
|||| | |||| ||||||||| || |||| ||| ||| | || ||| || | |||| ||
Sbjct 182 CAAG-A-TTCCGATCTCTCATGGCTTCCCCTGATCTCGAGGCAACAAGAACTTGCATGGG 239
Query 183 AAAAACCGAGAGGTTCCTCTA-TA-TCTGCTTAAACC-TGACTAAG-AGCAACCCTAAGT 238
|| ||| |||| || | ||| | |||||||| ||| || |||| | || || ||
Sbjct 240 AATAACAGAGAA-TTAC-CTAGTTGTCTGCTTAGACCGTGG-TAAGCATAAAGA-TA-GT 294
Query 239 A-TCGCTGGTTCACACTTCCCCCAGTTCCCAA-CGAACAAAAACTACTACCCGTCCCTTT 296
|||||||||||||||| | ||| ||| ||| | || | || |||| ||| ||||||
Sbjct 295 TGTCGCTGGTTCACACTTGCACCAATTCACAAAC-AAGAGAAGTTACTTCCCATCCCTTC 353
Query 297 GTTTACTTATC-ATCTC-AAT-TCCTCAACCGTC-TCCTCAACTGA-TTCAGAGATTTAC 351
|||| |||||| | || || | |||||| || || |||| || |||||||||||||
Sbjct 354 GTTTCCTTATCTAAATCCAAAATACTCAACTGTTGTC-TCAA-TGGGTTCAGAGATTTAC 411
Query 352 ATAATCGGAGGC 363
|| |||||||||
Sbjct 412 ATTATCGGAGGC 423
> Ahg931328 jgi|Araly1|931328|scaffold_303785.1
Length=1075
Score = 104 bits (56), Expect = 1e-21
Identities = 78/88 (89%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 859 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAA-AAGAGCTTTGGGG 917
|||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||
Sbjct 927 ACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGAGATTTAGGAA-AGCTTTGGGG 985
Query 918 ATTTGTAGAATGGTCTA-GAAAAGTGTT 944
||||| |||||||||| ||| |||||
Sbjct 986 TTTTGTTGAATGGTCTAAGAAT-GTGTT 1012
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474827411
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5