BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03000.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177 1483 0.0
Ahg939678 jgi|Araly1|939678|scaffold_600222.1 545 2e-154
Ahg939679 jgi|Araly1|939679|scaffold_600223.1 527 7e-149
Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182 241 1e-62
Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890 171 1e-41
Ahg923668 jgi|Araly1|923668|scaffold_104949.1 154 1e-36
> Ahg324957 jgi|Araly1|324957|fgenesh1_pm.C_scaffold_6000177
Length=1062
Score = 1483 bits (803), Expect = 0.0
Identities = 982/1068 (92%), Gaps = 13/1068 (1%)
Strand=Plus/Plus
Query 1 ATGTTTTG-CTCGTGTCTCGAGATTGtttttttCCTTGCCGGAAGACATCATTCTCAATT 59
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATG-TTTGCCTCGTGTCTCGAGATTGTTTTTTTCCTTGCCGGAAGACATAATTCTCAATT 59
Query 60 TCCATCGTTACCGGACGAAAATGAGACGAACAAATCATCAGACTCTCCTCCGACAGTATT 119
| | |||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 60 TTCTTCGTCACCGGACGAAAATGAGACGAAGAAATCATCAGACACTCCTCCGACAGTATT 119
Query 120 TTCATCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCG 179
|| |||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 TTTGTCGTTACCCGACGAAATCATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTATCG 179
Query 180 TCCATCTCTGTCCTTGGTCAACAAGGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGA 239
||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TCCATGTCTATCCTTGGTCAACAAGGATTTCCAATCTCTCATCGCTTCTCCTGATCTCGA 239
Query 240 GGCCACGCGCTCCCGCATAGGAGTAACAGAGAA-TCACCTCTATGTCTGCTTGGAGTCGA 298
||||||||| ||||| || |||||||||||||| | |||| ||||||||||| |||||||
Sbjct 240 GGCCACGCGATCCCGAATCGGAGTAACAGAGAAGT-ACCTTTATGTCTGCTTAGAGTCGA 298
Query 299 ATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAAGAACAGAAAG 358
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 299 ATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCAATTCCCAAACAACAGAAAC 358
Query 359 TGAAACCTATCATCCCTTCGTTTCCTTATCAACATCCCACATCATCAACTTTTGTCTCTA 418
||||||||||| || || |||||||||| ||||||||||||||||||| |||||||||
Sbjct 359 TGAAACCTATC--CCTTTA-TTTCCTTATCGACATCCCACATCATCAACTGTTGTCTCTA 415
Query 419 TTGGCTCAGAGATTTACATCATCGGAGGCTTCGTTAAGCGAAAGAGAAGC-AGGAGAGTC 477
|||| ||||||||||||||||||||||||||||||||| ||| ||||||| || |||||
Sbjct 416 TTGGTTCAGAGATTTACATCATCGGAGGCTTCGTTAAGGGAAGGAGAAGCCAG-AGAGTG 474
Query 478 TTGGTTCTCGATTGTCGATCTCATCAATGTCGTAGGCTCCCCAACATGGC-TCTACCTCG 536
|||||||| |||||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 475 TTGGTTCTAGATTGTCGATCTCATCAATGTCGTAGACTCCCCAACATG-CATCAACCTCG 533
Query 537 AGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGAT-CAAAGT 595
|||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 534 AGTTTCTGCAGCCGTTGATGTCATCGACGGTAAGATCTACGTGATTGGAGGATACAA-GT 592
Query 596 CTAAAAATATCGACAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGCCAA 655
|||| |||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||
Sbjct 593 CTAACAATATCGACAATTGGGGAGAGGTTTATGATCCAAAGACCCACACGTGGGAGCCAA 652
Query 656 TATTTCCCACAACAGTTGATCTCACCACTCAAAAGAGTGTGTTTCCAGGTAAATTGGTTA 715
|||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct 653 TATTACCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGCTTGGTAA 712
Query 716 TGGGTGGGAAAGTTTATGACATGGATGGGTTGAAAGTTAACTTGAACCTGAATAGTTGCG 775
||||||||||||| |||| ||||| ||| ||||| ||||||||||||| ||||| ||||
Sbjct 713 TGGGTGGGAAAGTCTATGGCATGGTTGGTTTGAAGGTTAACTTGAACCCGAATATTTGCT 772
Query 776 TGGTAGAGATAGACAACATGATGTGCCAAATATCAGTTTGCAAAGGGATACTAGTTTGGT 835
|||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 773 TGGTAGAGATAGACAACATGATGTGCCAAATATCGGTTTGCAAAGGGATATTACTTTGGT 832
Query 836 ATGATTCAGAGGAAGATTTGGTGTGGAATAAGTCGATGGTGTTTGACCGTCTAGGTCTCG 895
||||||||||||||||||||| ||||| || |||| ||||||||| |||||||||||||
Sbjct 833 ATGATTCAGAGGAAGATTTGGAGTGGAGTAGGTCGGTGGTGTTTGGCCGTCTAGGTCTCA 892
Query 896 ATTGGACTAAGGAAGGTAAAACGGAGATTTGGTGTGCCGAGATATCGTTGGAGAGACGCG 955
|||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 893 ATTGGACTAAGGAATGTAAAAAGGAGATTTGGTGTGCAGAGATATCGTTGGAGAGACGCG 952
Query 956 GTTTTGGAGAGCTTTGGGGATTCGTCGAATGGTCAAAGAAAGTGTTTACTTATGACGGAT 1015
|||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||
Sbjct 953 GTTTTGGAGAGCTTTGGGGATTTGTCGAATGGTCAAACAATGTGTTTACTTACGACGGAT 1012
Query 1016 GTGATTCTCCTTCAGATTTCTTTTTGCATTCCGCTATTGTGACTTATT 1063
||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 1013 GTGATTCTCCTTCAGATTTCTTTCTGCATTCGGCTTTTGTGACTTATT 1060
> Ahg939678 jgi|Araly1|939678|scaffold_600222.1
Length=1129
Score = 545 bits (295), Expect = 2e-154
Identities = 590/728 (81%), Gaps = 37/728 (5%)
Strand=Plus/Plus
Query 124 TCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCGTCCA 183
||||||||| ||| | |||||||||||| |||||||| ||||||||||| | ||||
Sbjct 69 TCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCCA 128
Query 184 TCTCTGTCCT-TGGTCAACAAGGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGAGGC 242
|||| | || | ||| ||||| |||| ||||||||||||||||||||| |||||| |
Sbjct 129 ACTCTAT-CTCTCGTCTCCAAGGGTTTCCGATCTCTCATCGCTTCTCCTGAGCTCGAGAC 187
Query 243 CACGCGCTCCCGCATAGGAGTAACAGAGAATCACCTCTATGTCTGCTTGGAGTC-GAATA 301
|| || |||||||| ||| |||||| | ||||||||| ||||| | | || | |||||
Sbjct 188 GACACGATCCCGCATGGGAATAACAGGGGATCACCTCTGTGTCTTCATAGA-CCTGAATA 246
Query 302 AGAACAACCCTAATCCTCGCTGGTTCAC-ACTTGCACCAATTCCCAAAGAACAGAAAGT- 359
|||| ||||||||||||||||||||| | | || | || |||||| | ||||||| |
Sbjct 247 AGAAAAACCCTAATCCTCGCTGGTTC-CTAGTTTCCCCGATTCCC--A-CACAGAAA-TC 301
Query 360 GAAACCTATCATCCCTTCGTTTCCTTATCAACATCCCACATCATCAACTTTTGTCTCTAT 419
|||||| |||||||||||||||| ||||| |||||| ||| ||||| ||||||| |
Sbjct 302 GAAACC---CATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTCTCAAA 358
Query 420 TGGCTCAGAGATTTACATCATCGGAGGCTTCGTTAAGCGAAAGAGAAGCAGGAGAGTCTT 479
||| ||| |||||||||| |||||||| || || | | |||||||||||| |||||| ||
Sbjct 359 TGGTTCAAAGATTTACATAATCGGAGGGTTTGTCAGGAGAAAGAGAAGCAAGAGAGTGTT 418
Query 480 GGTTCTCGATTGTCGATCTCATCAATGTCGTAGGCTCCCCAACATGGC-TCTACCTCGAG 538
| | ||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct 419 GATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACAT-GCGTCTACCTCGAG 477
Query 539 TTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGATCA-AAGTCT 597
||||| ||||||||||||| |||| |||||||||||| ||| |||| || | | ||||
Sbjct 478 TTTCTCCAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGG-TTACGAGTCG 536
Query 598 AAAAATATCGA-CAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGCCAAT 656
|| |||||||| || |||||||| |||| ||| ||| |||||||||| ||||||||| |
Sbjct 537 AACAATATCGATGAA-TGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCCATT 595
Query 657 ATTTCCCACAACAGTTGATCTCACCACT-CAAAAGAGTGTGTTTCCAGGTAAATTGGTTA 715
||| ||||||||| ||||||||||| | |||||||||| | ||||||||||||||||||
Sbjct 596 ATTGCCCACAACACTTGATCTCACC-GTCCAAAAGAGTGAGGTTCCAGGTAAATTGGTTA 654
Query 716 TGGGTGGGAAAGTTTATGACATGGATG--G-GTT-GAAAGTTA-ACT-T-GAACCTGAAT 768
|||||||||||||||||| |||||||| | ||| || ||| | | | ||| || |
Sbjct 655 TGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGAGC-TTACATTGTTGAAG--GA-T 710
Query 769 AGT-TGCGTGGTAGAGATAGACAACATGATGTGCCAAATATCAG-TTTGCAAAGGGATAC 826
|| ||| | ||||||||||| || ||||||||||||| | |||| | ||||| |
Sbjct 711 -GTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATC-GCTTTGGTATGGGATGC 768
Query 827 TAGTTTGG 834
||||||||
Sbjct 769 TAGTTTGG 776
> Ahg939679 jgi|Araly1|939679|scaffold_600223.1
Length=1165
Score = 527 bits (285), Expect = 7e-149
Identities = 534/652 (82%), Gaps = 26/652 (4%)
Strand=Plus/Plus
Query 104 CTCCTCCGACAGT-ATTTTCATCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGT 162
|||||||||| || ||||| ||||||||| |||| || |||| |||||||||||||||
Sbjct 73 CTCCTCCGAC-GTCGTTTTCTTCGTTACCGTACGACTTGGTTCTGAATTGTTTGGCTCGT 131
Query 163 GTCTCGAGATTCTACCGTCCATCTCTGTCCT-TGGTCAACAAGGAATTCCAATCTCTCAT 221
||||||||| || |||| || | | || | ||| ||||| |||| |||||||||
Sbjct 132 GTCTCGAGAATCCGTTATCCAACTTTAT-CTCTCGTCTCCAAGGGTTTCCGATCTCTCAT 190
Query 222 CGCTTCTCCTGATCTCGAGGCCACGCG-CTCCCGCATAGGAGTAACAGAGAATCACCTCT 280
|||||| ||||| ||||||||||| || || | ||| ||| ||| ||| || | |||
Sbjct 191 CGCTTCCCCTGAGCTCGAGGCCACACGATTCTC-CATGGGAAAAACCGAGGATTGCATCT 249
Query 281 ATGTCTGCTTGGA-GTCGAATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCA 339
||| ||||| | || ||| ||||||||||||| ||| ||| |||||||||| | |||
Sbjct 250 TTGTTTGCTTAAACCTC-AATCAGAACAACCCTAACCCTAGCTTGTTCACACTTTCCCCA 308
Query 340 ATTCCCAAAGAACAGAAAGTGAAACCTA-TCATCCCTTCGTTTCC-T-T-ATCAACATCC 395
||||||||| || || || | | ||| |||||||| |||||| | | ||||||||||
Sbjct 309 ATTCCCAAACAAGAGGAA-T--TA-CTACCCATCCCTTGGTTTCCTTATGATCAACATCC 364
Query 396 CACATCA-TCAACTTTTGTCT-CTATTGGCT-CAGAGATTTACATCATCGGAGGCTTCGT 452
|| || | |||| || | | | ||||| | ||||||||||||| |||||||||||| |
Sbjct 365 CAAAT-ACCCAACCATTCT-TGCAATTGG-TGCAGAGATTTACATAATCGGAGGCTTCCT 421
Query 453 TAAGCGAAAGAGAAGCAGGAGAGTCTTGGTTCTCGATTGTCGATCTCATCAATGTCGTAG 512
||| ||| |||||||| |||||| ||| |||||||||||| |||||||||||| |||||
Sbjct 422 CAAGAGAACGAGAAGCAAGAGAGTGTTGATTCTCGATTGTCTATCTCATCAATGGCGTAG 481
Query 513 GCTCCCCAACATGGC-TCTACCTCGAGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGA 571
||||| || || || |||| |||||| |||||| ||||| ||||| |||||||||||||
Sbjct 482 ACTCCCAAAAAT-GCGTCTATCTCGAGCTTCTGCTGCCGCGGATGTAATCGACGGTAAGA 540
Query 572 TCTACGTGGTTGGAGG-ATCAAAGTCTAAAAATATCGACAATTGGGGAGAAGTTTTTGAT 630
|||||||| ||||||| | ||| ||| || |||||||| ||||||||||| ||||||||
Sbjct 541 TCTACGTGATTGGAGGCA-CAAGGTCCAAGAATATCGAGAATTGGGGAGAGGTTTTTGAC 599
Query 631 CCAGAGACCCAAACGTGGGAGCCAATATTTCCCACAACAGTTGATCTCACCACTCAAAAG 690
||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 600 CCAAAGACCCAAACTTGGGAGCCAATATTTCCCACAACACTTGATCTCACCGTTCAAAAG 659
Query 691 AGTGTGTTTCCAGGTAAATTGGTTATGGGTGGGAAAGTTTATGACATGGATG 742
|||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 660 AGTGTGGTTCCAGGTAGGTTGGTAATGGGTGGGAAAGTTTATGACATGGATG 711
> Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182
Length=1011
Score = 241 bits (130), Expect = 1e-62
Identities = 262/324 (81%), Gaps = 15/324 (5%)
Strand=Plus/Plus
Query 533 CTCGAGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGATCAA 592
|||||| ||||||||||||||||| |||||||||| |||||||||| ||||||| |
Sbjct 11 CTCGAGAATCTGCAGCCGCTGATGTAATCGACGGTAGGATCTACGTGATTGGAGGCCCTT 70
Query 593 AGTCTAAAAATATCGACAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGC 652
||| | |||||||| |||||||||| | || ||||||| |||||||||| ||| ||
Sbjct 71 GGTCCGACAATATCGAGGATTGGGGAGAGGCTTATGATCCAAAGACCCAAACTTGGAAGA 130
Query 653 CAATATTTCCCACAACAGTTGATCTCACCACTCAAAAGAGTGTGTTTCCAGGTAAATTGG 712
|| |||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||
Sbjct 131 CATTATTGCCCACAACACTTGATCTCACCACTCAAAAGAGTGTGGTTCCAGGTAGATTGG 190
Query 713 TTATGGGTGGGAAAG-TT-TA-TGA-CATG-GA-T-G-GGT-TG--AAAG-TTAACTTGA 760
||||||| ||||||| || || | | ||| | | | | || || || ||||
Sbjct 191 TTATGGGAGGGAAAGTTTATATTTATGATGACATTAGTTATATGCCTGAGCTTCGCTTGG 250
Query 761 ACCTGAAT-A-G-TTGCGTGGTAGAGATAGACAACATGATGTGCCAAATATCAGTTTGCA 817
| |||| | | |||| ||||||||||||||||||||||||||||| |||| |||| ||
Sbjct 251 AGGAGAATAATGTTTGCTTGGTAGAGATAGACAACATGATGTGCCAAGTATCGGTTTACA 310
Query 818 AAGGGATACTAGTTTGGTATGATT 841
|||||||| || ||||||||||||
Sbjct 311 AAGGGATATTACTTTGGTATGATT 334
Score = 189 bits (102), Expect = 4e-47
Identities = 139/156 (89%), Gaps = 5/156 (3%)
Strand=Plus/Plus
Query 866 AGTCGATGGTGTTTGACCGTCTAGGTCTC---GATTGGACTAAGGAAGGTAAAACGGAGA 922
||||| ||||||||| || |||||||||| |||||||||||||| |||||| |||||
Sbjct 446 AGTCGGTGGTGTTTGGCCTTCTAGGTCTCAATTATTGGACTAAGGAATGTAAAAAGGAGA 505
Query 923 TTTGGTGTGCCGAGATATCGTTGGAGAGACGCGGTTTTGGAGAGCTTTGGGGATTCGTCG 982
|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 506 TTTGGTGTGCAGAGATATCGTTGGAGAGACGAGGTTCAGGAGAGCTTTGGGGATTCGTCG 565
Query 983 AATGGTCAAAGAAAGTGTTTACTTAT-GACGGATGT 1017
||||||||||||| ||| |||||| | |||||||||
Sbjct 566 AATGGTCAAAGAATGTGGTTACTT-TCGACGGATGT 600
> Ahg337325 jgi|Araly1|337325|fgenesh1_pg.C_scaffold_1003890
Length=1017
Score = 171 bits (92), Expect = 1e-41
Identities = 242/310 (78%), Gaps = 28/310 (9%)
Strand=Plus/Plus
Query 144 TCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCGTCCATCTCTGTCCTTGGTCAACAA 203
||||||||||||||||||||||||||||||||| || || ||| | | |||
Sbjct 138 TCTCAATTGTTTGGCTCGTGTCTCGAGATTCTA---TCAATG---GTC-T----C--CAA 184
Query 204 GGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGAGGCCACGCGCTCCCGCATAGGAGT 263
| | |||| ||||||||| ||||| |||||||||||||| || | | |||| ||| |
Sbjct 185 G-A-TTCCGATCTCTCATGGCTTCCCCTGATCTCGAGGCAACAAGAACTTGCATGGGAAT 242
Query 264 AACAGAGAATCACCTC-TATGTCTGCTTGGA--GTCGAATAAGAACAACCCTAATCCTCG 320
|||||||||| |||| | ||||||||| || || | |||| | || || | |||
Sbjct 243 AACAGAGAATTACCTAGT-TGTCTGCTTAGACCGTGG--TAAGCATAAAGATAGTTGTCG 299
Query 321 CTGGTTCACACTTGCACCAATTCCCAAAGAACAGAAAGTGAAACCTATCATCCCTTCGTT 380
||||||||||||||||||||||| |||| || |||| || | | | ||||||||||||
Sbjct 300 CTGGTTCACACTTGCACCAATTCACAAACAAGAGAA-GTTA--CTTCCCATCCCTTCGTT 356
Query 381 TCCTTATC-AACATCCCACAT-CATCAACTTTTGTCTCTATTGGCTCAGAGATTTACATC 438
|||||||| || |||| | || | |||||| ||||||| || || ||||||||||||||
Sbjct 357 TCCTTATCTAA-ATCCAAAATAC-TCAACTGTTGTCTCAATGGGTTCAGAGATTTACATT 414
Query 439 ATCGGAGGCT 448
||||||||||
Sbjct 415 ATCGGAGGCT 424
> Ahg923668 jgi|Araly1|923668|scaffold_104949.1
Length=822
Score = 154 bits (83), Expect = 1e-36
Identities = 191/241 (79%), Gaps = 15/241 (6%)
Strand=Plus/Plus
Query 213 ATCTCTCATCGCTTCTCCTGATCTCGAGGCCACGCGCTCCCGCATAGGAGTAACAGAGAA 272
|||||| || ||||| ||||| || |||||||| || ||||||| ||| |||||||||
Sbjct 223 ATCTCTTATGGCTTCCCCTGAGCTAGAGGCCACACGAACCCGCATGGGAATAACAGAGAC 282
Query 273 TCACCTCTATGTCTGCTTGGAGTC-GAATAAGAACAACCCTAATCCTCGCTGGTTCACAC 331
| |||||| ||||||||| || | ||||||| || || ||| | ||| |||||||||||
Sbjct 283 TTACCTCTGTGTCTGCTTAGA-CCTGAATAAGCACTACTCTAGTTCTCACTGGTTCACAC 341
Query 332 TTGCACCAATTCCCAAAGAACAGAAAGTGA-AACCTATCATCCCTTCGTTTCCTTAT-CA 389
||||||||||||||||| || ||||| | | ||| | | | |||||||||| || |
Sbjct 342 TTGCACCAATTCCCAAACAAGAGAAATT-ACAACAGAACGT---TTCGTTTCCT-ATGCT 396
Query 390 ACATCCC-ACAT-CATCAACTTTTGTCTCTA-TTGGCTCAGAGATTTACATCATCGGAGG 446
| ||||| | || | || ||| || |||| | |||| |||||||||||||| ||||||||
Sbjct 397 ATATCCCGA-ATAC-TCTACTGTTCTCTC-AGTTGGTTCAGAGATTTACATAATCGGAGG 453
Query 447 C 447
|
Sbjct 454 C 454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5