BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03010.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182 307 9e-83
Ahg939679 jgi|Araly1|939679|scaffold_600223.1 143 3e-33
> Ahg349589 jgi|Araly1|349589|fgenesh1_pg.C_scaffold_6000182
Length=1011
Score = 307 bits (166), Expect = 9e-83
Identities = 322/391 (82%), Gaps = 36/391 (9%)
Strand=Plus/Plus
Query 415 AGAGATTGACAAGGTGTCGTGCCTGATATT-T---TTATCCGATGGGAAGCTATTTTGGC 470
||||||||||||||||||||| | | |||| | || || |||||||| ||||||||||
Sbjct 651 AGAGATTGACAAGGTGTCGTG-C-G-TATTGTCGGTT-TCTGATGGGAATCTATTTTGGC 706
Query 471 GTGAAACAAAGCAAGGTTTTGAGAGGTGTAGTGTTATATTGGGAGAT-GATGAGCAAGTG 529
||||||| ||| | ||||||||| ||| |||| | || |||||| | || || |||||
Sbjct 707 GTGAAACGAAGGATGGTTTTGAGTGGTCCAGTG-T-TA-TGGGAG-TCGA--AG-AAGTG 759
Query 530 TCCTCTTATCAACTTGTTTCGGTGGCAAACGCCGCCGGAGGAGGAAGAGTGACAGTTTGG 589
||||| | | || |||| ||||| ||||||| || || |||||||||||||||||||
Sbjct 760 TCCTC---T--A-TTATTTCTGTGGCGAACGCCGGCGCAGAAGGAAGAGTGACAGTTTGG 813
Query 590 TGGAAGTCGGGGTTAAAAGTTCTGGATCTCTTAAGTGGCACTGAGACTTG-GGAATGTTA 648
|||||||| ||| | | | |||| || ||| | | || ||| || ||||||| |
Sbjct 814 TGGAAGTC---GTTGATA--T-TGGA---GTT-AGT-G-AGTGTGAC-TGAGGAATGTGA 860
Query 649 CACAAATATTCGGTGTGCAGAGATTTCGTTTGAGAGAAGAGGTTTAAGAGAGCTTTGGGG 708
|| || ||| |||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 861 AACGAAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAACAGAGCTTTGGGG 920
Query 709 ATTCGTTGAATGGTCTAGAGAGGTGTTTACCGTTGATGGATATGACGATACTTACGATTT 768
||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 921 ATTCGTTGATTGGTCTAAAGAGGTGTTTGCCGTTGATGGATATGACTCTACTTACGATTT 980
Query 769 CTTTTTAAATTCTGCTATTGTGACCTATTGA 799
|||||||||||||||||||||||| ||||||
Sbjct 981 CTTTTTAAATTCTGCTATTGTGACTTATTGA 1011
> Ahg939679 jgi|Araly1|939679|scaffold_600223.1
Length=1165
Score = 143 bits (77), Expect = 3e-33
Identities = 319/430 (74%), Gaps = 39/430 (9%)
Strand=Plus/Plus
Query 413 GTAGAGATTGACAAGGTGTCGTGCCTGATATTTTTATCCG-ATGGGAAGCTATTTTGGCG 471
|||||||| || || |||| ||||| |||| | || || ||||| | ||| |||||||
Sbjct 750 GTAGAGATAGAAAATGTGTTGTGCCAAATATCTCTA-GCGAATGGGTATCTACTTTGGCG 808
Query 472 TGAAAC-AAAGCA-A-GGTTTTGAGAGGTGTAGTGTTATATTGGGA--GATG-ATG-AGC 524
||| | || ||| | || | |||| || ||| | | | |||||| | | || ||
Sbjct 809 TGATCCTAAGGCAGATGGATCTGAGTGGAGTAACG-T-T-TTGGGACTTAAGCTTGAAG- 864
Query 525 AAGTGTCCTCTTATCAA-CTTGTTTCG-GTGGCAAACGCCGCCGGAGGAGGAAGAGTGAC 582
|| ||||| | |||||| ||| || | |||| |||| ||| ||||| | |||||||||
Sbjct 865 AACTGTCCCCGTATCAACCTT-ATT-GTGTGGAAAACTCCGGCGGAGAAAGAAGAGTGAA 922
Query 583 AGTTTGGTGGAAGTCGG-GGTTAAAAG--TTC-TGGATCTCTTAAGTGGCACTGAGACTT 638
||| |||||| |||||| ||| || | || || || | | || || | | |||
Sbjct 923 AGTGTGGTGGGAGTCGGTGGTGAATCGCCGTCAAGG-TCGCAGACGTCGC-C-G-TACTA 978
Query 639 GGGAATGTT-ACACAAATATTCGGTGTGCAGAGATTTCGTTTGAGAGAAGAGGTTTAAGA 697
|||| || ||||| | ||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 979 ATGAAT-TTCACACAGAGATTTGGTGTGCAGAGGTTTCGTTTGAGAGACGAGGTTTAGGA 1037
Query 698 GAGCTTTGGGGATTCGTTGAATGGTCTAGAGAGGTGTTTACC-GTTGATGGATATGACGA 756
|||||||||||||||||||||||||||| | | ||||||||| || ||||||| ||||
Sbjct 1038 GAGCTTTGGGGATTCGTTGAATGGTCTAAAAATGTGTTTACCTGT-GATGGATTTGACCC 1096
Query 757 TA-C--TTA--C-GATTTCTTTTTA-AATTCTGCTATTGTGAC-CTATTGATCAGTGGGA 808
|| | || | | ||| ||||| ||| | |||||||| || | |||||||| || ||
Sbjct 1097 TAACCCTTTTTCTGGTTTATTTTTGCAAT-CAGCTATTGTCACAC-ATTGATCATTGAGA 1154
Query 809 CTTTATCTTA 818
||||| |||
Sbjct 1155 TTTTATTTTA 1164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5