BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03030.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939681 jgi|Araly1|939681|scaffold_600225.1 597 3e-170
Ahg903840 jgi|Araly1|903840|Al_scaffold_0003_968 298 4e-80
> Ahg939681 jgi|Araly1|939681|scaffold_600225.1
Length=379
Score = 597 bits (323), Expect = 3e-170
Identities = 353/367 (96%), Gaps = 3/367 (1%)
Strand=Plus/Plus
Query 185 TGAATAATGGCTACGCCAATGATTGCAGGtgctgctgtagctgctgctgctgt-tgctgG 243
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 15 TGAATAATGGCTACGCCAATGATTGCAGGTGCTGCTGTAGCTGCAGCTGCT-TATGCTGG 73
Query 244 TAGATATGGTATATTGGCTTGGCAAGCTTTCAAGGCAAGACCTCGTGTTCCTAGAATGCG 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 74 TAGATATGGTATATTGGCTTGGCAAGCTTTCAAGGCAAGACCACGTGTTCCTAGAATGCG 133
Query 304 CAGGTTTTATGAAGGTGGTTTCCAAAGTTCTATGACCCGCCGAGAAGCTGCTCTCATTCT 363
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 134 CAGGTTTTATGAAGGTGGTTTCCAAAGTTCTATGACACGCCGAGAAGCTGCTCTCATTCT 193
Query 364 TGGTGTTAGGGAGAGTGTTGTGGCAGATAAGGTGAAGGAAGCTCACCGGAGAGTGATGGT 423
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 194 CGGTGTTAGGGAGAGTGTTGTGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGT 253
Query 424 TGCAAATCACCCAGACGCTGGAGGCAGTCACTATCTTGCTTCTAAGATCAATGAAGCCAA 483
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 254 TGCAAACCACCCGGACGCTGGAGGCAGTCACTATCTGGCTTCTAAGATCAATGAAGCCAA 313
Query 484 AGATATGATGCTTGGAAAATCCAACAACAGCGGTTCTGCCTTTTGATTTGTCATGTGTCT 543
||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 314 AGAGATGATGCTTGGAAAATCCAACAACACCGGGTCTGCCTTTTGATT-GTCATGTGTCT 372
Query 544 GATACGA 550
|||||||
Sbjct 373 GATACGA 379
> Ahg903840 jgi|Araly1|903840|Al_scaffold_0003_968
Length=339
Score = 298 bits (161), Expect = 4e-80
Identities = 278/332 (84%), Gaps = 18/332 (5%)
Strand=Plus/Plus
Query 207 TTGCAGGtgctgctgtagctgctgctgctgt-tgctgGTAGATATGGTA-TATTGGCTTG 264
||||||| |||||||| |||||||||||| | |||||||| |||||| | || ||| ||
Sbjct 17 TTGCAGGCGCTGCTGTTGCTGCTGCTGCT-TATGCTGGTAAATATGG-ATTAGAGGCATG 74
Query 265 GCAAGC-TTTCAAGGC-AAGACCTCG-T-GTTCCTAGAATGCGCAGGTTTTATGAAGGTG 320
|||||| ||| || || ||||| | | | ||||||||||| | || ||||||||||
Sbjct 75 GCAAGCGTTT-AA-GCTGAGACC-AGTTAG-GCCTAGAATGCGAAAATTCTATGAAGGTG 130
Query 321 GTTTCCAAAG-TTCTATGACCCGCCGAGAAGCTGCTCTCATTCTTGGTGTTAGGGAGAGT 379
|||||| ||| | |||||| || ||||||||||||| ||||| |||||||||||||||
Sbjct 131 GTTTCC-AAGCTACTATGAATCGGAGAGAAGCTGCTCTAATTCTCGGTGTTAGGGAGAGT 189
Query 380 GTTGTGGCAGATAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTTGCAAATCACCCAGAC 439
|| | |||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 190 GTAGCGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGTGGCAAATCATCCAGAT 249
Query 440 GCTGGAGGCAGTCACTATCTTGCTTCTAAGATCAATGAAGCCAAAGATATGATGCTTGG- 498
|| ||||| || || || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 250 GCAGGAGGAAGCCATTACCTTGCGTCTAAGATCAATGAAGCCAAAGACATGATGCTTGGC 309
Query 499 AAAATCCAACAACAGC-GGTTCTGCCTTTTGA 529
|||| |||| ||| | |||||||| ||||||
Sbjct 310 AAAA-CCAAGAACT-CTGGTTCTGCGTTTTGA 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5