BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03040.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1 2824 0.0
Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969 486 2e-136
> Ahg487077 jgi|Araly1|487077|fgenesh2_kg.6__211__AT5G03040.1
Length=1931
Score = 2824 bits (1529), Expect = 0.0
Identities = 1807/1936 (93%), Gaps = 39/1936 (2%)
Strand=Plus/Plus
Query 10 ctctctctctcttctcCATTTGCAATTATGATAATGTGAAAGC---------AATTCGAA 60
||||||||||||||| |||| |||||||||||||||||||||| || |||
Sbjct 1 CTCTCTCTCTCTTCTTCATTCGCAATTATGATAATGTGAAAGCATAAGAAAGAAGAAGAA 60
Query 61 GAAGAAAAGTTATCTTCGCACCTCAGCAAAGATCC--A-----ATCGATTCGATTCTTAA 113
||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 GAAGAAAAGTTATCTTCGCACCTCAGCAAAGATCCAAACTCTCATCGATTCGATTCTT-G 119
Query 114 GCTTTTTCGTCTTCTCCGATAAGGTCACTACTTAGAAGCCGCGTTGTGGTTTAGTTGACT 173
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 120 GCTTTTTCGTCTTCTCCGATAAGGTCACTACTTACAAGCCGCGTTGAGGTTTAGTTGACT 179
Query 174 CCTCCAGG-TTT-TATCTTCAAGCTTTTTCGTCTATCAGATCTGGTGTCACTGTCTTCTC 231
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CCTCCAGGTTTTATATCTTCAAG-GGTTTCGTCTATCAGATCTGGTGTCACTGTCTTCTC 238
Query 232 ATAGGATTACATAGAGATGGGGAAAAAAGCTAAATGGTTTTCAAGTGTTAAGAAAGCATT 291
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACAGGATTACATAGAGATGGGGAAAAAAGCTAAATGGTTTTCAAGTGTTAAGAAAGCATT 298
Query 292 CAGCCCAGATTCAAAGAAGTCGAAGCAAAAATTGGCTGAGGGACAAAATGGTGTTATCTC 351
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 299 CAGCCCAGATTCAAAGAAGTCGAAACAAAAATTGGCTGAGGGACAAAATGGTGTGATCTC 358
Query 352 TAATCCTCCTGTTGTGGATAATGTTAGACAATCTTCTTC-T-T-CTCCTCCTCCTGCTCT 408
|||||||||||| || ||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 359 TAATCCTCCTGTGGTTGATAATGTTAGACAATCTTCTTCTTCTCCTCCTCCTCCTGCTCT 418
Query 409 TGCTCCTCGTGAAGTGAGAGTAGCTGAAGTGATTGTTGAACGGAACAGGGATCTTTCACC 468
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 419 TCCTCCTCGTGAGGTTAGAGTAGCTGAAGTGATTGTTGAACGGAACAGGGATCTTTCCCC 478
Query 469 TCCTTCTACAGCAGATGCTGTGAATGTTACAGCTACTGATGTTCCTGTAGTTCCATCTTC 528
|||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 479 TCCTTCGACTGCAGATGCTGTGAATGTTACAGCTGCTGATATTCCTGTAGTTCCATCTTC 538
Query 529 ATCTGCTCCTGGTGTTGTTCGTCGCGCTACACCTACTCGATTTGCTGGAAAGTCAAACGA 588
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 539 ATCTGCTCCTGGTGTTGTTCGTCGCGCTACACCTGCTCGATTTGCGGGAAAGTCGAATGA 598
Query 589 AGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGGCAAGGAGAGCGTT 648
||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| |
Sbjct 599 AGAAGCCGCTGCTATCTTGATTCAAACTATTTTTAGAGGCTATTTGGCAAGAAGAGCACT 658
Query 649 GCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTGATGGAAGGATCTGTTGTTAAGCG 708
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 659 GCGGGCAATGAGGGGTTTGGTCAGGCTTAAGTTATTGATGGAAGGCTCTGTTGTTAAACG 718
Query 709 GCAAGCTGCAAATACTCTAAAATGTATGCAGACTCTCTCTCGTGTACAGTCGCAGATCCG 768
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 719 GCAAGCTGCAAATACTTTAAAATGTATGCAGACTCTCTCTCGTGTACAGTCACAGATCCG 778
Query 769 AGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAA 838
Query 829 ACATGCTAAAGAGCTAGCTGGCTTGAAGAACGGGGATAACTGGAATGATAGCATTCAATC 888
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GCATGCCAAAGAGCTAACTGGCTTGAAGAACGGGGATAACTGGAATGATAGCATTCAATC 898
Query 889 AAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAG 958
Query 949 GGCATTGGCTTATTCATACTCTCATCAGCAAAACTGGAAGAACAACTCTAAATCTGGAAA 1008
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 959 GGCATTGGCTTATGCATACTCTCATCAGCAAAACTGGAAGAACAACTCTAAATCTGGTAA 1018
Query 1009 CCCGATGTTCATGGATCCAAGCAACCCGACATGGGGTTGGAGCTGGTTAGAGAGATGGAT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CCCGATGTTCATGGATCCAAGCAACCCGACATGGGGTTGGAGCTGGTTAGAGAGATGGAT 1078
Query 1069 GGCTGGTAGGCCACTAGAGAGTTCCGAGAAAGAACAAA---GCAACAGCAACAATGACAA 1125
||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1079 GGCTGGTCGGCCACTAGAGAGTTCCGAGAAAGAACAAAACAGCAACAGCAACAACGACAA 1138
Query 1126 TGCTGCCTCGGTCAAGGGCTCTATTAACCGCAACGAAGCTGCAAAATCTCTAACCCGCAA 1185
||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1139 TGCTGCCTCGGCCAAGGGCTCTATTAACCGTAACGAAGCTGCAAAATCTATAACCCGCAA 1198
Query 1186 TGGCTCAACTCAACCAAACACACCATCATCCGCAAGAGGGACCCCAAGAAACAAAAACAG 1245
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGCTCAACTCAGCCAAACACACCATCATCCGCAAGAGGGACCCCAAGAAACAAAAACAG 1258
Query 1246 TTTCTTCTCACCTCCAACTCCCTCAAGGCTAAACCAATCCTCGAGGAAATCCAATGACGA 1305
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||
Sbjct 1259 TTTCTTCTCACCTCCAACTCCCTCAAGGTTAATCCAATCCTCGAGAAAATCCAACGACGA 1318
Query 1306 CGACTCCAAAAGCACAATCTCGGTCCTGTCCGAGAGGAACCGCAGACACAGCATTGCTGG 1365
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1319 CGACGCCAAAAGCACAATCTCGGTCCTGTCAGAGAGGAACCGCAGACACAGCATTGCTGG 1378
Query 1366 TTCATCAGTCAGAGACGATGAGAGCCTCGCTGGCTCACCAGCTCTCCCGAGCTACATGGT 1425
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1379 TTCATCAGTCAGAGACGACGAGAGCCTCGCTGGCTCACCGGCTCTCCCGAGCTACATGGT 1438
Query 1426 TCCAACTAAATCAGCTCGAGCCAGGCTCAAGCCCCAAAGCCCATTAGGTGGTACCACACA 1485
|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1439 TCCAACTAAATCAGCTAGAGCCAGGCTCAAGCCGCAAAGCCCATCAGGTGGTACCACACA 1498
Query 1486 GGAAAACGAAGGGTTCACAGACAAGGCATCAGCTAAGAAACGGCTCTCGTATCCAACTTC 1545
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1499 GGAAAACGAAGGGTTCACGGACAAGGCATCTGCTAAGAAACGGCTCTCGTATCCAACTTC 1558
Query 1546 GCCTGCATTGCCTAAACCACGGCGGTTCTCAGCTCCCCCTAAGGTGGAGAGTGGCGGCGT 1605
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1559 ACCTGCATTGCCTAAACCACGGCGGTTCTCAGCTCCTCCTAAGGTGGAGAGTGGCGGTGT 1618
Query 1606 TACCGTGACCAACGGAGCAGGCAGCTGAGGTATTTTATTTAATATAATTA-TTTTCCCAC 1664
| |||||||||| |||||| ||||||||||||| |||||||||| || |||||||||
Sbjct 1619 CGCTGTGACCAACGAAGCAGGTAGCTGAGGTATTT-ATTTAATATATTTTCTTTTCCCAC 1677
Query 1665 TTATGAATGTGTCCGAGA--TTGTTGTCTCTTATGTGTTCCCTTCATTTCGTAATTCATT 1722
||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1678 TTATGGATGTGTCCGAGAGATTGTCGTCTGTTATGTGTTCCCTTCATTTCGTAATTCATT 1737
Query 1723 TGTGCAGTGTAAGCGCCAGTCATTTAtttttttACTATAATAAATTTTATAACCTTTTAA 1782
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1738 TGTGCAGTGTAAGCGCCAGTCATTTATTTTTTTACGATAATAAATTTTATAACCTTTTTA 1797
Query 1783 AATTCAT--GTTCTTTTGTTTCTTTGAATATTTAAGTTATTTTTATTAA---TGTTGGAT 1837
||||||| |||| |||||||||||||||| |||||| |||| ||||| ||||| ||
Sbjct 1798 AATTCATATGTTCCTTTGTTTCTTTGAATACTTAAGTGGTTTT-ATTAAAAATGTTGAAT 1856
Query 1838 GAATTGGAATATGATGATGTTATTTGTATTGTAATGCA-GATCCTTTAAAGCTTAATTAA 1896
|| ||||||| ||| | ||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 1857 GAGTTGGAATCTGAGGCTGTTATTTGAATTGTAATGCAAGATCCTTAAAAGCTTAATTAA 1916
Query 1897 TT-TGTAATACCTTTT 1911
|| | || ||||||||
Sbjct 1917 TTCTTTA-TACCTTTT 1931
> Ahg903841 jgi|Araly1|903841|Al_scaffold_0003_969
Length=1374
Score = 486 bits (263), Expect = 2e-136
Identities = 465/561 (83%), Gaps = 20/561 (4%)
Strand=Plus/Plus
Query 569 TTTGCTGGAAAGTCAAACGAAGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGT 628
||||| || |||||||| ||||| || ||||| ||||| || ||| ||| ||||| ||
Sbjct 301 TTTGCAGGCAAGTCAAAGGAAGATGCAGCTGCCATCTTAATTCAGTCTACGTTTAGGGGC 360
Query 629 TATTTGGCAAGGAGAG-CGTTGC--GGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTG 685
||||| | | || | || | | | ||||||||| || |||||||||||| ||
Sbjct 361 AATTTGTC-TTTA-AGTC-TTTCTTGTGTAATGAGGGGGCAGGAAAGACTTAAGTTACTG 417
Query 686 ATGGAAGGATCTGTTGTTA-AGCGGCAAGCTGCAAATACTCTAAAATGTATGCAGACTCT 744
||||||||||| |||| || | ||||||||||||| |||||| |||||||||||||| ||
Sbjct 418 ATGGAAGGATCGGTTG-TACAACGGCAAGCTGCAATTACTCTTAAATGTATGCAGACGCT 476
Query 745 CTCTCGTGTACAGTCGCAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGC 804
||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 477 CTCTCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGC 536
Query 805 TCGCCAGAAACAACTCCTTCAGAAACATGCTAAAGAGCTAGCTGGCTTGAAGAACGGGGA 864
||| || || ||||| |||||||| ||||| |||||||||| ||||| ||||| ||||
Sbjct 537 TCGACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTAGGAGGCTTAAAGAATGGGGG 596
Query 865 TAACTGGAATGATAGCATTCAATCAAAGGAGAAAG-TTGAAGCGA--AT-TTGCTAAGCA 920
||| ||||| || |||| ||| || ||||| | || |||||||| || |||| | ||
Sbjct 597 TAATTGGAACGACAGCAATCAGTCGAAGGA-ACAGGTTGAAGCGGGTATGTTGC-A--CA 652
Query 921 AGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATTCATACTCTCATCAGCAAA 980
|||||||||| |||||||||||||||||||||||||| ||| ||| | | ||||||||||
Sbjct 653 AGTACGAGGCGACAATGAGAAGGGAAAGGGCATTGGCATATGCATTCACACATCAGCAAA 712
Query 981 ACTGGAAGAACAACTCTAAATCTGGAAACCCGATGTTCATGGATCCAAGCAACCCGACAT 1040
| | ||||| |||||| ||| ||| ||| ||||||||||||||||| ||||||||||| |
Sbjct 713 ATTTGAAGAGCAACTCGAAAACTGCAAATCCGATGTTCATGGATCCCAGCAACCCGACTT 772
Query 1041 GGGGTTGGAGCTGGTTAGAGAGATGGATGGCTGGTAGGCCACTAG-AGAGTTCCGAGAAA 1099
|||||||||||||||||||||| ||||||||||| ||||| | | ||||||| ||||||
Sbjct 773 GGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCA-TGGGAGAGTTCAGAGAAA 831
Query 1100 GAACAAAGCAACAGC-AACAA 1119
||||||| || || | |||||
Sbjct 832 GAACAAAACA-CAACCAACAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5