BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03050.1

Length=802
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg324960 jgi|Araly1|324960|fgenesh1_pm.C_scaffold_6000180           693    0.0  


> Ahg324960 jgi|Araly1|324960|fgenesh1_pm.C_scaffold_6000180
Length=423

 Score =  693 bits (375),  Expect = 0.0
 Identities = 407/423 (96%), Gaps = 0/423 (0%)
 Strand=Plus/Plus

Query  107  ATGAACACTGAAATGGAAGAAGACGCAGGGAATGGAGGATTTCGGAAACGCATGAGAGCA  166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAACACTGAAATGGAAGAAGACGCAGGGAATGGAGGATTTCGGAAACGCATGAGAGCA  60

Query  167  TCTGATGAAGAGGGAAAAGGAGATTCGAGAGATGGAATTAGCCTTGATCATACCATTGAG  226
            ||||| || |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct  61   TCTGACGAGGAGGGAAAAGGAGATTCGAGAGATGGAATTAGTCTTGATAATACCATTGAG  120

Query  227  AATGAAGAAGCTGAGACGAAACTTGTTGCTTCTGATGAGATGGAACTTAGCATTGCGCAA  286
            ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || 
Sbjct  121  AATGAAGAAACTGAGACGAAACTTGTTGCTTCTGATGAGATGGAACTTAACATTGCTCAG  180

Query  287  ATTCTCGATAAGATTGAGAGCTTCACACAAACTGTTTCTAACTTGCTGGAAACAGGGAAA  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  181  ATTCTCGATAAGATTGAGAGCTTCACACAAACTGTTTCTAACTTGCTGGAAACTGGGAAG  240

Query  347  ACAATGCTCAAGGAACTCAGTAACGAATTCGAAGAACGCTTGATCATGATACACAAGGAA  406
            |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACAATGTTTAAGGAACTCAGTAACGAATTCGAAGAACGCTTGATCATGATACACAAGGAA  300

Query  407  CATGTTGAGAAATGGCAGGACGAGATCAAGGAGTTGCGTTTGCTTGATGCATCAAACGAG  466
            |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct  301  CATGTTGAGAAATGGCAGGAGGAGATCAAGGAATTGCGTTTGCTTGATGCATCAAATGAG  360

Query  467  GAGACTACTTCCCTCTTACACAACGCTCGCTATCTGATTCAGAATCCTAGCATTGAGCAA  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  361  GAGACTACTTCCCTCTTACACAACGCTCGCTATCTGATTCAGAATCCTAGCATCGAGCAA  420

Query  527  TGA  529
            |||
Sbjct  421  TGA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29621506509


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5