BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03060.1
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487079 jgi|Araly1|487079|fgenesh2_kg.6__213__AT5G03060.1 1206 0.0
> Ahg487079 jgi|Araly1|487079|fgenesh2_kg.6__213__AT5G03060.1
Length=878
Score = 1206 bits (653), Expect = 0.0
Identities = 812/887 (92%), Gaps = 18/887 (2%)
Strand=Plus/Plus
Query 140 ATGACTGGAAAATCATCAGCTCGTTCAAACAAATCGGGGAAGAACAAAATCTCGTCGGTG 199
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTGGAAAATCATCAGCTCGTTCGGACAAATCGGGGAAGAACAAAATCTCGTCGGTG 60
Query 200 GCTACTCCGACAAGAAGAAATTTGGTTGTTCAGGAGGAGATTTTGGCGACAAAACATGAA 259
||||||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||||||
Sbjct 61 GCTACTCCGACAAGAAGCAATTTGTTTGCTCAAGAGGAGATTTTAGCAACAAAACATGAA 120
Query 260 ATTCTCAAGGAGAATTATGAGAATCTGGAAAAAGATTACAAAAGTATAGAGGAAAGTTTT 319
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 121 ATTCTCAAGGAGAATCATGAGAATCTGGAAAAAGATTACAAAAGTCTAGAGGCAAGTTTT 180
Query 320 AAGCAGATGAATGAAATGAACGAGATAATGAAGTTTCAAT-ATCAGAAGCAAATTAAGGA 378
||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||
Sbjct 181 CAGCAGATGAATGAAATGAACGAGATAATGAAGTTTCA-TCATCAGAACCAAAATAAGGA 239
Query 379 ACTCGAGGAGAAAATTCTAAGCTTGCTTAAGGATTTagagaaagagagaagtgagaaaga 438
|||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 240 ACTCGAAGAGAAAAATCTGAGCTTGCTCAAGGATTTAGAGAAAGAGAGAAGTGAGAAGGA 299
Query 439 ggagtatatgaaggagat-gaagggaatg-atcagtgagaaAGAGGCCATTATCAATGAT 496
|| |||||||||||| || ||||| |||| | |||||||| |||||||||||||||| |
Sbjct 300 GGCGTATATGAAGGA-ATTGAAGGCAATGGAG-AGTGAGAAGGAGGCCATTATCAATGGT 357
Query 497 TTGAGTGTTAAGAATCAGGAGCTTTTGATTGCGAAAGAGGAAGAAGTGGAGAAGCTGAAG 556
|||||| |||||||||||||||||||| ||||||||||| |||| | |||||||||||||
Sbjct 358 TTGAGTATTAAGAATCAGGAGCTTTTGTTTGCGAAAGAGAAAGACGAGGAGAAGCTGAAG 417
Query 557 AAGATGGAGAACAAGTATGCTGAATTGAAAGAGAGATTTGATGCGGCTGAA-TCACAATG 615
||||| |||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct 418 GAGATGAAGAACAAGTATGATGAATTAAAAGAGAGATTTGATGCGGCA-AACTCACAATG 476
Query 616 TTCATTCTTGAAATCGCTTTTTGATGCTGAGAATCTCGCCGGTCTAGGGAGTA-GCGATG 674
|||||| ||||||||||| ||||| |||||||||||| ||||| |||| || | ||||||
Sbjct 477 TTCATTTTTGAAATCGCTCTTTGACGCTGAGAATCTCTCCGGTATAGG-AGCAAGCGATG 535
Query 675 TGGCTTTCGAAAATGAGGTTATTGTGGTGGAGGAT-TATAATGTGACTATCAAGAATGAG 733
|||||||| |||||||||||||||||||||| ||| | | ||||||||||||||||||||
Sbjct 536 TGGCTTTCAAAAATGAGGTTATTGTGGTGGATGATCT-TGATGTGACTATCAAGAATGAG 594
Query 734 GTTATTATGGTGGATGATCATAATGTGAATAACACTCCAACAGATACGATTGTGATCCTT 793
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 595 GTTATTGTGGTGGATGATCATAATGTGAATAACACTGCAACAGATACGATTGTGATCATT 654
Query 794 GACGAGAGTGATGCTGAAAATGATAATCCTCATCCAAGAGAGAGTAACATAATCTC-TGA 852
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||
Sbjct 655 GACGAGAGTGATGCTGAAAATGATAATCCTCCTCCAAGAGAGCGTAACATAATC-CGTGA 713
Query 853 AAATTCTGTTGATGTAAAACAAGAACAACAATCAGCTGGACCAAGC-TCATCAAAAGTAA 911
||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 714 AAAGTCTGTTGATGTAAAACAAGAACAACAATCAGATGGACCAA-CATCATCAAAAGTAA 772
Query 912 ATCGTCTATTGtcatcatcgtcgtcatcatcatcatcatcatcaGTTGAACATGTATTC- 970
||| || ||||||||||||||| |||||||||||||||||||||| |||| ||||| |
Sbjct 773 ATCATCGATTGTCATCATCGTCATCATCATCATCATCATCATCAGATGAATATGTAA-CA 831
Query 971 GTTGAGCTTCCCTTTAAAAGGTCCCGGGATATTTATAACAAGTCTTG 1017
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTTCAGCTTCCCTTTAAAAGGTCCCGGGATATTTATAACAAGTCTTG 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37856056581
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5