BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03070.1
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487080 jgi|Araly1|487080|fgenesh2_kg.6__214__AT5G03070.1 2852 0.0
> Ahg487080 jgi|Araly1|487080|fgenesh2_kg.6__214__AT5G03070.1
Length=1968
Score = 2852 bits (1544), Expect = 0.0
Identities = 1786/1902 (94%), Gaps = 19/1902 (1%)
Strand=Plus/Plus
Query 76 TTACTCCGGTGAAATTACCGAATCAAAAACCCTACTCTCGAAGAAACTTGCTGTGCTCAA 135
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||||
Sbjct 76 TTACTCCGGTGAAATTACCGAATCAAAAACCCTACGCTAGAAGAAACTAGCAGTGCTCAA 135
Query 136 GCTTCTTC-AATGGCGGATGATGGCTCCGCCTCTAATCGAAGGGACCCAATAAAGTCTTC 194
||||| || |||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 136 GCTTC-TCTAATGGCAGATGATGGCTCCGCGTCTAATCGAAGAGACCCAATAAAGTCTTC 194
Query 195 AGTTGGAAATGTTGCGGGACAAAGAAGACGAAAACAAGCTGTTACAGTGGCGAAGGAAAG 254
|||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 195 AGTTGGGCATGTTGCGGGGCAAAGAAGACGGCAACAAGCTGTTACAGTGGCAAAGGAGAG 254
Query 255 AAGGGAATTACTGGTTAGGGCAAAGCGGCTTTGTAGGGTGGGTACTAATGGCGATGTTGA 314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 255 AAGGGAATTACTGGTTAGGGCAAAGAGGCTTTGTAGGGTGGGTACTAATGGCGATGTTGA 314
Query 315 GGATGCTCTTGTTGAGAATGAGATGATGGTTGATGAAGAGCAGCCTATATTGGAGGCTCA 374
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 315 GGATTCTCTTGTTGAGAATGAGATGATGATTGATGAAGAGCAGCCAATATTGGAGGCTAA 374
Query 375 AGCCAGTAAATCTGTGGAAGAGCTCAAGTCCGCTGTTCAATACCAGGGAAAAGGTGCAAT 434
|||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 375 AGCCAGTAAATCCGTCGAAGAGCTTAAGTCCGCTGTTCAATATCAGGGAAAAGGTGCAAT 434
Query 435 GCAGAAGAGGGTGACTGCTCTTCGGGAACTCAGGCGTTTATTATCAAAATCTGAGTTCCC 494
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 435 GCAGAAGAGGGTGACTGCTCTTCGGGAACTCAGGCGTATACTATCAAAATCCGAGTTCCC 494
Query 495 TCCTGTTGAAGCTGCGCTCCGTGCTGGTGCAATACCTTTACTTGTGCAGTGTCTTTCATT 554
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCCTGTTGAAGCTGCGCTCAGCGCTGGTGCAATACCTTTACTTGTGCAGTGTCTTTCATT 554
Query 555 TGGCTCCCCCGACGAACAGTTACTTGAGTCAGCTTGGTGTCTTACCAACATTGCTGCTGG 614
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 555 TGGCTCTCCTGACGAACAGTTACTTGAGTCAGCTTGGTGTCTCACAAACATTGCTGCTGG 614
Query 615 AAAACCTGAAGAAACAAAAGCTCTATTACCTGCATTGCCGTTACTCATTGCTCACCTTGG 674
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 615 AAAACCTGAAGAAACAAAAGCTTTATTACCTGCACTGCCGTTACTCATTGCTCACCTTGG 674
Query 675 AGAAAAGAGCTCCGCACCGGTGGCTGAGCAGTGCGCATGGGCAATTGGTAATGTTGCCGG 734
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 675 AGAAAAGAGCTCTGCACCGGTGGCTGAGCAGTGTGCATGGGCAATTGGTAATGTTGCGGG 734
Query 735 TGAAGGAGAAGATTTGAGAAATGTTCTTTTGTCTCAAGGGGCTTTGCCACCTCTAGCACG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGAAGGAGAAGATTTGAGAAATGTTCTTTTGTCTCAAGGGGCTTTGCCACCTCTAGCACG 794
Query 795 TATGATTTTTCCCGACAAGGGTTCAACAGTGAGAACAGCTGCATGGGCATTGTCAAATCT 854
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 795 TATGATTTTTCCCGACAAGGGTTCAACAGTAAGAACAGCTGCATGGGCATTGTCAAATCT 854
Query 855 GATTAAGGGACCTGAGTCAAAGGCAGCAGCACAACTTGTTAAAATTGATGGGATACTGGA 914
|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 855 GATTAAGGGACCTGAGTCGAAGGCGGCAGCACAACTTGTTAAAGTTGATGGGATACTGGA 914
Query 915 TGCAATTCTTCGACACTTGAAGAAAACGGATGAGGAAACTGCCACGGAAATTGCATGGAT 974
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 915 TGCAATTCTTCGACACTTGAAGAAAACGGATGAAGAAACTGCCACGGAAATTGCATGGAT 974
Query 975 CATTGTTTACCTATCTGCCCTCTCAGATATCGCTACAAGTATGCTCTTGAAGGGAGGCAT 1034
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 975 CATTGTTTACCTATCTGCCCTCTCAGATATAGCTACAAGTATGCTCTTGAAGGGAGGCAT 1034
Query 1035 TCTTCAACTACTTATTGACAGATTAGCAACCTCAAGTAGCCTACAACTTCTCATCCCGGT 1094
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1035 TCTTCAACTACTTATTGAAAGATTAGCAACCTCAAGTAGCCTACAACTTCTTATCCCGGT 1094
Query 1095 TCTCCGAAGTTTAGGCAATTTTGTCGCTGTTGATCCCAAAGCAGTATTAACAATTCTTAT 1154
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1095 TCTCCGAAGTTTAGGCAACTTTGTCGCTGTTGATCCCAAAGCAATATTAACCATTCTTAT 1154
Query 1155 CCGTGAACAGAACACTGAAGAAAGCATCATTGGTGTGCTTGCAAAGTGCTTAAGAAGCGA 1214
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1155 CCGTGAACAGAACACCGAAGAAAGTATCATTGGTGTGCTTGCAAAGTGCTTAAGAAGCGA 1214
Query 1215 GCACCGTGTTTTAAAGAAGGAAGCTGCTTGGGTGCTATCTAATATAGCGGCGGGATCTAT 1274
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||
Sbjct 1215 GCACCGTGTTTTAAAGAAGGAAGCTGCATGGGTGTTATCTAATATAGCCGCGGGATCCAT 1274
Query 1275 TGAACACAAGAGAATGATACATTCTACTGAAGTAATGCCATTGTTGCTACGGATTCTTTC 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1275 TGAACACAAGAGAATGATACATTCTACTGAAGTAATGCCATTGTTGCTACGGCTTCTGTC 1334
Query 1335 CACATCCCCCTTTGATATAAGGAAAGAAGTTGCCTATGTCTTGGGAAATCTCTGTGTAGA 1394
|||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1335 CACATCGCCCTTTGATATAAGGAAAGAAGTCGCCTACGTCTTGGGCAATCTCTGTGTAGA 1394
Query 1395 ATCTGCAGAAGGAGACAGAAAACCAAGGATAATTCAAGAGCATTTAGTCTCTATTGTCAG 1454
|||||||| ||||||| |||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1395 ATCTGCAGCAGGAGACGGAAAACCAGGGATAATTCAAGAGCACTTAGTCTCTATCGTCAG 1454
Query 1455 TGGCGGTTGCCTCCGGGGTTTCATTGAGCTGGTCAGATCTCCTGATATCGAAGCTGCTAG 1514
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AGGCGGTTGCCTCCCAGGTTTTATTGAGCTGGTCAGATCTCCTGATATCGAAGCTGCTAG 1514
Query 1515 GCTTGGTCTTCAGTTCATTGAGCTGGTTTTAAGAGGAATGCCAAACGGGGAAGGGCCAAA 1574
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1515 GCTTGGTCTTCAGTTCATTGAGCTGGTCTTAAGAGGAATGCCAAACGGGGAAGGTCCAAA 1574
Query 1575 GCTTGTGGAAGGAGAAGACGGTATCGATGCAATGGAACGGTTTCAGTTTCATGAGAACGA 1634
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||
Sbjct 1575 GCTTGTGGAAGGAGAAGACGGTATTGATGCAATGGAAAGGTTTCAGTTTCATGAAAATGA 1634
Query 1635 AGAGCTGA-GAGTCATGGCGAACAGTCTTGTGGATAAATACTTTGGTGAAGATTATGGAA 1693
|||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AGAGCT-ACGAGTCATGGCAAACAGTCTTGTGGATAAATACTTTGGTGAAGATTATGGAA 1693
Query 1694 TCGATGAATGAAATCGCCTCGGATTTTAGGGTGAGAATACAAAGAAAGTCGGATGATGAA 1753
||||||||||||||| ||| ||| |||| |||| | |||||||||| ||||||||||| |
Sbjct 1694 TCGATGAATGAAATCTCCTGGGACTTTAAGGTGGGTATACAAAGAATGTCGGATGATGGA 1753
Query 1754 ATCAAAAGGAAACTAGTCATCTTAGCGTTTGCTTGTAACGATAGTGAGTGAGAGAGAAAG 1813
|||||| || |||||||||||||| ||||||||||| ||||| ||| | |||||||||
Sbjct 1754 ATCAAA-GGT--CTAGTCATCTTAGCTTTTGCTTGTAAGGATAGAGAGAGTGAGAGAAAG 1810
Query 1814 ACAATAGTCTTTAGGTTTTG-T-C-T-TTTGGGTTGTTGTTGTAACTACTTGTAATACAG 1869
| | |||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1811 AGAGTAGTCTTTAGGTTTTGGTTCCTCTTTGGGTTGTTGTTGTAACTACTTGTAATACAG 1870
Query 1870 TTTTGTCTCACCGAAGG---TTTGATTCCTTTTTGTCGTATCCTCCTTGTCACTTCAAA- 1925
|||||||||||| || ||| ||| |||||||||||| | |||||||||||||||
Sbjct 1871 TTTTGTCTCACC-AATTCCATTTT-TTC-TTTTTGTCGTATTC-CCTTGTCACTTCAAAA 1926
Query 1926 TCCAATTATAAGATACACTGTCAATGTAATTATGATTTTTAG 1967
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 1927 TCCAATTATAAGATACACTGTCAACGTAATTATGATTTTTAG 1968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73971255790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5