BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03080.1
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939686 jgi|Araly1|939686|scaffold_600230.1 1133 0.0
> Ahg939686 jgi|Araly1|939686|scaffold_600230.1
Length=721
Score = 1133 bits (613), Expect = 0.0
Identities = 683/718 (95%), Gaps = 0/718 (0%)
Strand=Plus/Plus
Query 90 TTCCTTTGGATCTATCGTCAATGGACCTAATACCTCAGCAGCTCAAGGCCGTAACTCTTA 149
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 1 TTCCTTTGGATCTATCATCAATGGACCTCCTACCACAGCAGCTCAAGGCCGTAACTCTCA 60
Query 150 CACACGTCCGGTACCGTCCCGGAGATCAGCTCGGACATTTCCTCGCCTGGATCTCTCTCG 209
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 CACACGTCCGGTACCGTCCCGGAGATCAGTTCGGACATTTCCTCGCCTGGATCTCTCTCG 120
Query 210 TCCCAGTCTTCATTAGCCTCGGTGGATTCGTCTCTCATTTCCTTTTCCGGCGTGAGCTTC 269
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCCTGTCTTCATCAGCCTCGGTGGATTCGTCTCTCATTTCCTTTTCCGGCGTGAGCTTC 180
Query 270 AAGGGATCTTCTTCGGTATAGGTCTCGTGATCTCACAATTCATCAACGAGTTTATCAAAA 329
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 181 AAGGGATCTTCTTCGGTGTAGGTCTCGTGATCTCACAATTCATCAACGAGTTCATTAAAA 240
Query 330 CATCTGTAGAGCAAGCGCGTCCCGAGACATGTACGTTGCTCGAAGCTTGCGATTCACATG 389
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 CATCTGTAGAACAAGCTCGTCCCGAGACTTGTACGTTGCTCGAAGCTTGCGATTCACATG 300
Query 390 GATGGCCATCAAGCCACTCGCAATTCATGTTCTTCTTCGCTACGTATTTCAGTTTGATGG 449
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 GATGGCCATCAAGCCACTCGCAATTCATGTTCTTCTTCGCTACTTATTTCAGTTTGATGG 360
Query 450 GATGTAAAGGAATTGGATTCTGGTTTGGTTTAAGAAGCAGATGGATTATGAATCTTCTTC 509
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 GATGCAAAGGAATTGGGTTCTGGTTTGGTTTAAGAAGTAGATGGATTATGAATCTTCTTC 420
Query 510 ATTGGTCTTTAGCTGTTGTTACCATGTATTCTAGGGTTTATTTAGGTTACCACACGGTGG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGGTCTTTAGCTGTTGTTACCATGTATTCTAGGGTTTATTTAGGTTACCACACGGTGG 480
Query 570 CGCAGGTTTTTGCTGGTGCGGCTCTTGGGGGTATTGTTGGTGCGAGTTGGTTCTGGGTGG 629
|||| ||||| || || ||| | ||||||| | ||||||||| |||||||||||||||||
Sbjct 481 CGCAAGTTTTCGCCGGAGCGACGCTTGGGGCTGTTGTTGGTGGGAGTTGGTTCTGGGTGG 540
Query 630 TGAATTCTGTGTTGTATCCATTTTTTCCGGTGATTGAGGAGAGTGTATTGGGGAGATGGC 689
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 TTAATTCTGTGTTGTATCCATATTTTCCGGTGATTGAGGAGAGTGTATTGGGGAGATGGT 600
Query 690 TATATGTTAAGGATACTTCGCATATTCCTGATGTGTTGAAGTTTGAATATGACAATGCCA 749
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 601 TATATGTGAAGGATACTTCGCACATTCCTGATGTGTTGAAGTTTGAATATGACAATGCAA 660
Query 750 GAGCTGCTAGGAAGGATATGGATTCTGCTAAATCTGATTAATTTGGCTAATTTGATTT 807
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 661 GAGCTGCTAGGAAGGATATGGACTCTGCTAAATCTGATTAATTTGGCTATTTTGATTT 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5