BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03100.1
Length=1558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939687 jgi|Araly1|939687|scaffold_600231.1 1206 0.0
> Ahg939687 jgi|Araly1|939687|scaffold_600231.1
Length=1288
Score = 1206 bits (653), Expect = 0.0
Identities = 911/1033 (88%), Gaps = 28/1033 (3%)
Strand=Plus/Plus
Query 28 CGGTGTCGACTTCATCAGCTCTCTACCCGACGAAATCCTCCACCATATCCTCGCCAATA- 86
||||||||| |||||||||||||||||||||| ||||||||||||||| || || |||
Sbjct 47 CGGTGTCGATTTCATCAGCTCTCTACCCGACGCGATCCTCCACCATATCTTCTCCTATAT 106
Query 87 CACCTACCAAGCTCGCGATCAGAACCTCCGTCTTATCCAAACGATGGAAGCATGTATGGT 146
| | || ||| |||| ||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct 107 TA-CGACTAAGGTCGCCATCAGAACCTCCGTCTTGTCCAAACGATGGAAACATATCTGGT 165
Query 147 ACGAGACACCTTCTATCTCAATTGTTTGCAATAGAGTAGATCCTGATTCGCTAAACAAAA 206
|||||||||| ||| |||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 166 ACGAGACACCGTCTCTCTCAATTGTTTGCTATAGAGTAGATCCCAATTCGATAAACAAAA 225
Query 207 CCCTAAGTAGCTACTCGACTCCCAAAATCAAGAGTTTCGATGTTACTATAAGCAGA-GAT 265
||||| ||||||||||| |||||||||||| ||||||||||||||| || |||| | ||
Sbjct 226 CCCTACGTAGCTACTCGGCTCCCAAAATCACGAGTTTCGATGTTACCATGAGCA-ATGAC 284
Query 266 GTCACCGTACCTGAGATTGATACCTGGATTAATCTCGCTCTGTCACGCAAGGCTGAGAAT 325
||||| | ||||||||| ||||| ||||| ||||||||| | |||||||| |||||| ||
Sbjct 285 GTCACTGCACCTGAGATCGATACGTGGATCAATCTCGCTGTTTCACGCAACGCTGAGGAT 344
Query 326 GTATCTCTC-AGATTCACATCTCATTATAGATTCCGAGATACATTCTTCATCAATTCCTC 384
|||||||| || |||| || | |||| ||||||| |||||| |||||||||||||||||
Sbjct 345 TTATCTCTCAAG-TTCAGATATAATTACAGATTCCCAGATACCTTCTTCATCAATTCCTC 403
Query 385 TCTGAAGCAGCTTAGTTTGACTTTGGTTTATTGCATTCTGAATCCCAAGTGCGTTGTCTC 444
|||||||||||||||||||| ||||| ||||| || ||||| |||||| |||||||||||
Sbjct 404 TCTGAAGCAGCTTAGTTTGAATTTGGGTTATTCCAATCTGATTCCCAAATGCGTTGTCTC 463
Query 445 TTGGTCATCGTTAAGGAACTTGTCGTTGAATCGTTGCAAGGTGTCTGATGATTCAATTGC 504
||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 464 TTGGTCATCGTTAAGGACCTTGTCGTTGAATCGTTGCAAGATGTCTGATGGCTCATTTGC 523
Query 505 CAAAATTCTCACTGGTTGTTCATTGCTCGAAAGCTTGACATTGAATCTCTGTGATAGACT 564
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 524 CAAAATTCTCTCTGGTTGTTTATTACTCGAAAGCTTGACATTGAATCTCTGTGATAGACT 583
Query 565 CAATGATCTTGATCTGAGCAAGTCACTAAGTTTGAGAAGACTGGAGATACT-TGGAGACC 623
|| |||||||||||||||||||||||||| |||||||| ||||| | | ||||||||
Sbjct 584 TTATCATCTTGATCTGAGCAAGTCACTAAGTCTGAGAAGATTGGAGGT-GTATGGAGACC 642
Query 624 GTT-G---GA--CACCAGAGAGGATTGTAGCGCCACACATTCGTTATTTGAGATTGGAAA 677
||| | || |||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 643 GTTGGATTGAGGCACCAGCGAGGATTGTAGCGCCACACATCCATTATTTGAGATTGGAAA 702
Query 678 ACTATCAGCGACCATCTACTTTAGTGGATGTCTCATCTTTAACCGAAGCTAATCTCGGTC 737
|||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| ||
Sbjct 703 ACTATCAGCGACCATCCAATTTAGTGGATGTCTCCTCTTTAACAGAAGCTAATCTCAATC 762
Query 738 TTTCAAAACATGTACTTGACTATTTCACATGTGAAAT-G--GAGACTGAATCGCTTCAAT 794
|||| | |||||||||||||||||||||||||||| | ||| |||||| |||||| |
Sbjct 763 TTTC---ATATGTACTTGACTATTTCACATGTGAAATCGTCGAGGCTGAATTGCTTCAGT 819
Query 795 ACATGGTGCGACAGACGGTGGTTAAGTTGCAAAACATAAAGAAGCTTACTATTGGGGGAA 854
|||||||||| ||| | || |||||||||||| ||||||||||||||||||||||||
Sbjct 820 TCATGGTGCGAGAGATTCTAGTAAAGTTGCAAAACGTAAAGAAGCTTACTATTGGGGGAA 879
Query 855 TTTTTCTTCAGATTCTATCTCTTGCCGAGCTCTGTGGTGTTACTCTTCCAGTCTTCCAGA 914
|||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 880 TTTTTCTTCAGATTCTATCTCTTGCCGAGCTCCGTGGTGTTACTTTTCCA-------A-A 931
Query 915 ATTCAATATCGAAGCTTTGACTGTTGAAACGAGGATTGATCAGTCTGTGATTCCTGGTCT 974
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 932 ATTCAATATCGAAGCTTTGACTGTTGAAACGAGGATTGATCAGTCTATGATTCCTGGTCT 991
Query 975 AGCAAGGCTGCTACAAAACTCTCCTGGACTTAAAAGGATAACAGTTAACATAACGAAGTG 1034
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| ||
Sbjct 992 AGCAAGGCTGCTACAAAACTCTCCTGGACTGAAACGGATAACAGTTTACATAATGAAATG 1051
Query 1035 CAACACCACACCG 1047
|||||||| ||||
Sbjct 1052 CAACACCATACCG 1064
Score = 174 bits (94), Expect = 1e-42
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 1146 TGCAAAGATGAAACATGTGGATTCGTTCATAAAACTTGTCATGGGAAACACAAAGACATT 1205
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1097 TGCAAAGATGAAACATGTGGCTTCGTTCGTAAAACTTGTCATGGGAAACACAAAGACATT 1156
Query 1206 AGAGAAGCTGGTTTTACAGTTTGGAGATTACCTTGATGCA 1245
||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 AGAGAAGCTGGTTTTACAGTTTGGAGATTACCTTGATGCA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58354255340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5