BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03110.1
Length=1157
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349596 jgi|Araly1|349596|fgenesh1_pg.C_scaffold_6000189 1160 0.0
> Ahg349596 jgi|Araly1|349596|fgenesh1_pg.C_scaffold_6000189
Length=882
Score = 1160 bits (628), Expect = 0.0
Identities = 785/858 (91%), Gaps = 22/858 (3%)
Strand=Plus/Plus
Query 55 ATGATGATTTCTCGGAGACCCGTTTCAAGTCCGGGTCGGGTAGAGAAATATCCACCGCCT 114
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGATGATTTCTCGGAGACCCGTTTCAAGTCCGGGTCGGGTCGAGAAATATCCACCGCCT 60
Query 115 TTTATGGGGTTTTTGAGAAGTAAGAGCAACGGCGGAAGTACAAGCAGGAGTAGAAGTCGA 174
|||||||| |||||||| || || || ||||||||||| ||||| || |||||||| |||
Sbjct 61 TTTATGGGTTTTTTGAGGAGCAAAAGTAACGGCGGAAGCACAAGTAGAAGTAGAAGCCGA 120
Query 175 AGCAGAGGAAGGTCACGCGCTAGTCCTCT-TTTCGTTCGCCGGAATAAATCCGCGGCGGC 233
|||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||
Sbjct 121 AGCAGAGGAAGGTCACGCGCGAGTCCTCTATTT-GTTCGCCGGAATAAATCCGCTGCGGC 179
Query 234 GGTGGCTCAAGAACCGTCGTCTCCGAAGGTTACTTGCATGGGTCAAGTCCGGGTCAACCG 293
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTGACTCAAGAACCGTCGTCTCCGAAGGTTACTTGCATGGGTCAAGTCCGGGTCAACCG 239
Query 294 ATCGAAGCCCAAAATTAAACCCGAATCTCGAGATAACCCGACCCGACGACGATGTGAGTG 353
||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 240 ATCGAAGCCCAAAATTAAAACCGAATCTCTAGAAAACCCGACCCGACGACGATGTAAGTG 299
Query 354 GCTCCGAAACGCGTCGTTTTATAACAAATTCGCCGGGAAAATCAAAACGATGACGTTTTG 413
| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 300 GATCCGAAACGCGGCGTTTTATAACAAATTCGCCGGGAAAATCAAAACGTTGTCGTTTTG 359
Query 414 GCCTAAATGGAGACTCTGTTCGTTTTCGTGTGCTTGTCGGAATTTGAAGGAGAAAGATTC 473
|||||||||| || | | ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 360 GCCTAAATGGCGATTGTTTTCGTTTTCGTGTTCTTGTCGGAAATTGAAGGAGAAAGATTC 419
Query 474 TCCGAGAAGTCAATTAGATCATCCGACAACGGAATCAGTCAGAGAAATCAAAGAAGAAAT 533
||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 420 TCCGAGAAGCCAATTAGATCGTCCGGCAACGGAATCAGTCAGAGAAATCAAAGAAGAAAT 479
Query 534 CGAAG--GA-GAAG---AAAA-TTTCGAAATCCCTAAATTATTTGTGTCTCCGGCTACTA 586
||||| || |||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CGAAGAAGAAGAAGGGGAAAAGTTT-GAAATCCCTAAATTATTTGTGTCTCCGGCTACTA 538
Query 587 CTCCGCCTATAAACGCTCTGTTGTTGACGAGAAGCAGATCTGCACCGTATAGATCGTCGT 646
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGCCGCCGGTAAACGCTCTGTTGTTGACGAGAAGCAGATCTGCACCGTATAGATCGTCGT 598
Query 647 CGTTGGCTTTCAGATTCTGGGAAGAAAATAACCAACGAGAAGTTGAATCACAGCAAAATG 706
||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 599 CGTTGGCTTTCAGATTCTGGGAAGAGAATAACCAACGCGAAATTGAATCACAGCAAAATG 658
Query 707 TGAGATCGGAGAAAACTGATTCGGAAGTTCCCATCGAGAAAATCAATGGT-TTTCACGAG 765
||||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||
Sbjct 659 TGAGATCGGAGAAAACTGAATCGGAAGTTCCCACCGAGAAAATCAATGGTGTTT-ACGAT 717
Query 766 CCGGAGTATGTTGACAGAGATGAAGAAGAATTCAC-GAAGTTAAGATTTGTACGGCAG-C 823
| ||||||| ||||||||||||| ||| || || |||| | | |||||| || |
Sbjct 718 ----A--ATGTTGATAGAGATGAAGAAGGATTAACAGA-GTTAGGGTCTGTACGA-AGGC 769
Query 824 CGGTGTTGACAAGGAGCAAATCGGAGCCGGCGAGGATCGGCGAGAAGATGATGGTGTTGC 883
| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 770 CAGCGTTGACAAGGAGCAAATCAGAGCCGGCGAGGATCGGTGAGAAGATGATGGTGTTGC 829
Query 884 TTCCCGATGAAGAAGAAG 901
|||| |||||||||||||
Sbjct 830 TTCCGGATGAAGAAGAAG 847
Score = 60.2 bits (32), Expect = 3e-08
Identities = 35/36 (97%), Gaps = 1/36 (3%)
Strand=Plus/Plus
Query 1023 ATAGTAGAGGAAACAAATTTGTATAAAGATTTGTAA 1058
||| ||||||||||||||||||||||||||||||||
Sbjct 848 ATA-TAGAGGAAACAAATTTGTATAAAGATTTGTAA 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43155142044
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5