BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03120.1

Length=574
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487083 jgi|Araly1|487083|fgenesh2_kg.6__217__AT5G03120.1          545    1e-154


> Ahg487083 jgi|Araly1|487083|fgenesh2_kg.6__217__AT5G03120.1
Length=498

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 462/531 (87%), Gaps = 57/531 (11%)
 Strand=Plus/Plus

Query  68   TTTATAAGTAACGAAAATGAAATCGACCGTCATGATGATTTTCCTCATTATCTACCTCCT  127
            ||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  1    TTTATAAATAACGAAAATGAAATCGACCGTC---ATGATTTTCCTCATTATCTACCTCCT  57

Query  128  CATCGCCGTGCCTTGCTTCGCTAAAGGATCGGAGCAAACGGATTCAGAGGTGTACGAGAT  187
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  58   CCTCGCCGTGCCTTGCTTCGCTAAAGGATCGGAGCAAACGGATTCAGAGGTGTACGAGAT  117

Query  188  CGATTACAGGGGACCAGAGACTCATAACTCTAGACCTCCACCGGAAACTATGCACGGCAA  247
            ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  118  CGATTACAGGGGACCGGAGACTCATAACTCTAGACCTCCACCGGAAACTTTGCACGGCAA  177

Query  248  GCCACCGTACATCCACCATAATACCTCCGCCGCTGGGCTCGGTGCTCATGTAGGAGGAAA  307
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  178  GCCACCGTACATCCACCATAATACCTCCGCAGCTGGGCTCGGTGCTCATGTAGGAGGAAA  237

Query  308  GAACTAGAGAGAGAGCGAGACCTTTTCCAAGGAGAAGA-------CTCA---G----AAG  353
            |||||||||| |||| ||||||||||||||||||||||       ||||   |    |||
Sbjct  238  GAACTAGAGAAAGAGAGAGACCTTTTCCAAGGAGAAGAGAGGGGACTCAAAAGCTTTAAG  297

Query  354  TTGAAGAGGAAGATT-ACGAGAGTTGTGATATATATATGAGTAATTAATGATGTTAATTG  412
            |||||||||||| || ||||||||||||||||||||  |||||||    ||||||  || 
Sbjct  298  TTGAAGAGGAAGTTTTACGAGAGTTGTGATATATAT--GAGTAAT----GATGTT--TT-  348

Query  413  ATACAAATTTATACTTTAATTATTTATCATATGAAGATGATCATCGATGTGTGATCAGTA  472
            ||     || || |   | | ||  |  || |     |||||||||||||||||||||||
Sbjct  349  AT-----TT-AT-C---A-T-ATG-A--AT-T-----TGATCATCGATGTGTGATCAGTA  387

Query  473  CAGTTAGTGTGAATAA----CACACTACTCTCCT-----GATGTCATGTCCGGTCTTTTA  523
            ||||||||||||||||    ||||||||||||||     |||||||||||||||| ||||
Sbjct  388  CAGTTAGTGTGAATAATTTACACACTACTCTCCTCTCCTGATGTCATGTCCGGTCCTTTA  447

Query  524  TTTATTTCATTTTTCAATTCTCATGCACCGTTCTCTATATCAtttttttCG  574
            |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  448  TTTATTTCTTTTTTCAATTCTCATGCACCGTTCTATATATCATTTTTTTCG  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20985573950


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5