BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03140.1
Length=2427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1 3568 0.0
> Ahg487084 jgi|Araly1|487084|fgenesh2_kg.6__218__AT5G03140.1
Length=2411
Score = 3568 bits (1932), Expect = 0.0
Identities = 2254/2405 (94%), Gaps = 39/2405 (2%)
Strand=Plus/Plus
Query 44 TTTTGTATGATTGTATCAGTGAGAGAACCCAACAACCTCCAAA---TT----CTTCCTCA 96
|||||||||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 22 TTTTGTATGATTGTATCAGT--GAGAACCCAACAACCTCCAAATTCTTCCAACTTCCTCA 79
Query 97 GATCTCCAAAGGAATCCAATGAAAAACT-TAAACTAATGTTGAAACTTCCTCCGAGATTC 155
| | | |||||||||||||||||||| | || || |||||||||| ||||||||||||||
Sbjct 80 GGT-TTCAAAGGAATCCAATGAAAAA-TATATACAAATGTTGAAAATTCCTCCGAGATTC 137
Query 156 TTCTCTGTTTACTCAACTCTCATCCACATTCTTGCCTCCTTCCTCTGCTCCTCCGACGTC 215
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 138 TTCTCTGTTTACTCAACTCTCATCCACATTATTGCCTCCTTCCTCTGCTCCTCCGACGTC 197
Query 216 AGAGGCGATTTCCCGGCGACGAGATTCGATCTCGGAACGTTGACTCTCTCAAGCCTCAAA 275
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 198 AGAGGCGATTTTCCGGCGACGAGATTCGATCTCGGAACGTTGACTCTCTCAAGTCTCAAG 257
Query 276 CTTCTCGGCGATGCTCATCTCAACAACGGAACTATTAAGCTCACTCGTGAACTCTCTGTT 335
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 CTTCTCGGGGATGCTCATCTCAACAACGGAACTATTAAGCTCACTCGTGAACTCTCTGTT 317
Query 336 CCCACTTCCACCGCCGGAAAAGCTCTTTATGGGAAACCGGTAAAATTCCGGCACCCGGAA 395
||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 318 CCCACTTCCACCGCCGGGAAAGCTCTTTATGGAAAACCGGTTAAATTCCGGCACCCGGAG 377
Query 396 ACTAAATCTCCGGCGAGTTTCACTACTTACTTCTCCTTCTCGGTAACGAATCTCAATCCT 455
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 378 ACTAAATCTCCGGCGAGTTTCACCACTTACTTCTCCTTCTCGGTAACGAATCTCAATCCT 437
Query 456 TCCTCAATTGGCGGTGGATTAGCTTTCGTAATCTCCCCTGATGAAGATTACTTAGGATCC 515
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 438 TCCTCAATTGGCGGTGGGTTAGCTTTCGTAATCTCCCCTGATGCAGATTACTTAGGATCC 497
Query 516 ACCGGTGGATTTCTCGGTCTAACCGAAGAAACCGGATCCGGGTCGGGTTTTGTGGCGGTT 575
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GCCGGTGGATTTCTCGGTCTAACCGAAGAAACCGGATCCGGGTCGGGTTTTGTGGCGGTT 557
Query 576 GAATTCGATACGTTAATGGATGTGCAATTCAAAGACGTTAACGGGAACCACGTGGGATTG 635
|||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 558 GAATTCGATACGCTGATGGATGTACAATTCAAAGACGTAAACGGGAACCACGTGGGATTG 617
Query 636 GATCTAAACGCCGTCGTTTCAGCCGCGGTAGCCGATTTGGGAAACGTCGACATCGATCTC 695
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 618 GATCTAAACGCCGTCGTTTCAGCCGCGGTAGCCGATTTAGGAAACGTCGACATCGATCTC 677
Query 696 AAGAGCGGAAACGCCGTGAATTCATGGATCACTTATGACGGGTCGGGTCGGGTTTTAACA 755
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 678 AAGAGCGGAAACGCCGTGAATTCATGGATCACTTATGACGGGTCGGGTCGAGTTTTATCA 737
Query 756 GTTTACGTCTCTTACTCAAACTTGAAACCTAAATCGCCGATTTTGTCGGTTCCTCTCGAT 815
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||
Sbjct 738 GTTTACGTCTCTTACTCAAACGTGAAACCTAAATTGCCGATTTTGTCGGTTCCTCTTGAT 797
Query 816 CTTGATCGTTACGT-AAGCGATTCAATGTTTGTTGGATTCTCTGGATCAACACAAGGAAG 874
|||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||
Sbjct 798 CTTGATCGTTACGTGAA-CGATTCAATGTTCGTCGGATTCTCTGGATCAACACAAGGAAG 856
Query 875 CACTGAGATTCACAGTGTCGATTGGTGGAGCTTTAGTTCATCTTTCGAAGAATCATCGGA 934
||| |||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 857 CACAGAGATTCACAGTATCGATTGGTGGAGCTTTAGTTCATCTTTC---GATTCATCGGA 913
Query 935 ATCACCACCGCCGATGCCTAATTCTCCTCCTCCGTCGTCACCGTC-T--TCATCAATCAC 991
||| |||||||||||| |||||||||||||||| ||||| ||||| | |||| |||||
Sbjct 914 ATCTCCACCGCCGATGTCTAATTCTCCTCCTCCCTCGTCTCCGTCGTCAACATCGATCAC 973
Query 992 ACCATCCCTATCCACCGTCCGG-AGAAAAACCGCCGATCCATCGTCCTCTTGCCGTAACA 1050
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 974 ACCATCCGTATCCACCGTCCGGAAG-AAAACCGCCGATCCATCGTCCTCTTGCCGTAACA 1032
Query 1051 AACTCTGTAAAAAATCACCAGCCGCCGTCGCCGGAGTAGTAACCGCCGGAGCATTTTTCT 1110
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1033 AACTCTGTAAAAAATCACCAGCCGCCGTCGCCGGAGTTGTAACAGCCGGAGCATTTTTCT 1092
Query 1111 TAGCATTATTCGCCGGAGTGATAATCTGGGTTTACTCTAAAAAGATCAAATACACTCGAA 1170
||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || ||
Sbjct 1093 TAGCACTATTCGCCGGAGTGATAATCTGGGTTTACTCCAAAAAGATCAAATACAATCAAA 1152
Query 1171 AGTCTGAATCTTTAGCATCGGAAATAATGAAATCGCCGAGAGAGTTCACTTACAAGGAGC 1230
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1153 AGTCTGAATCTTTCGCATCGGAAATCATGAAATCGCCGAGAGAATTCACTTACAAGGAGC 1212
Query 1231 TGAAATTAGCCACCGACTGTTTCAGCTCATCGAGAGTCATCGGAAACGGAGCATTCGGCA 1290
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1213 TGAAATTAGCCACCGACTCTTTCAGCTCATCGAGAGTCATCGGAAACGGAGCATTTGGCA 1272
Query 1291 CCGTCTACAAAGGAATCTTACAAGATTCCGGCGAAATTATCGCAATCAAAAGATGCAGCC 1350
||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 1273 CCGTCTATAAAGGAATCTTACCGGATACCGGCGAAATCATCGCAATCAAAAGATGCAGCC 1332
Query 1351 ACATTTCTCAAGGAAACACAGAATTCTTATCGGAATTATCTCT-AATCGGAACCCTCCGT 1409
| ||||||||||| ||||| ||||||||||| |||||||| || ||||||||| ||||||
Sbjct 1333 ATATTTCTCAAGGGAACACCGAATTCTTATCTGAATTATC-CTTAATCGGAACACTCCGT 1391
Query 1410 CACCGGAATCTTCTCCGTCTTCAAGGCTATTGCAGAGAAAAAGGCGAAATTCTGTTAATT 1469
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1392 CACCGGAATCTTCTCCGTCTTCAAGGCTACTGCAGAGAAAAAGGCGAAATTTTGTTAATT 1451
Query 1470 TATGATCTAATGCCTAATGGATCACTTGATAAAGCACTCTACGAGTCTCCGACTACATTA 1529
|| ||| ||||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 1452 TACGATTTAATGCCTAATGGATCACTCGATAAAGCACTTTACGAGTCTCCGACGACGTTA 1511
Query 1530 CCCTGGCCTCACCGGAGAAAAATACTTCTTGGAGTCGCTTCTGCTTTGGCTTATTTGCAT 1589
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1512 CCATGGCCTCACCGGAGAAAAATACTTCTCGGAGTCGCTTCCGCTTTGGCTTATTTGCAT 1571
Query 1590 CAAGAGTGCGAGAATCAGATCATTCACCGTGATGTTAAAACAAGTAACATTATGCTCGAC 1649
|| |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1572 CAGGAGTGCGAGAATCAAATTATTCACCGTGATGTCAAAACAAGTAACATTATGCTCGAC 1631
Query 1650 GCGAATTTTAATCCGAAGTTAGGTGATTTTGGACTCGCGAGGCAAACGGAGCACGATAAA 1709
|| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1632 GCAAATTTTAATCCGAAATTAGGCGATTTTGGACTCGCGAGGCAAACGGAGCACGATAAA 1691
Query 1710 TCGCCGGACGCAACCGCCGCCGCTGGAACAATGGGGTATTTAGCGCCGGAGTATTTGTTA 1769
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TCGCCGGACGCAACCGCCGCTGCTGGAACAATGGGGTATTTAGCGCCGGAGTATTTGTTA 1751
Query 1770 ACCGGTCGAGCGACGGAGAAAACCGACGTTTTTAGCTACGGAGCCGTTGTTTTAGAAGTA 1829
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1752 ACCGGTCGAGCGACGGAGAAAACCGACGTTTTCAGCTACGGAGCCGTTGTGCTAGAAGTA 1811
Query 1830 TGCACTGGTAGAAGACCCATAACCCGACCCGAACCGGAACCCGGTTTAAGACCCGGTTTG 1889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 TGCACTGGTAGAAGACCCATAACCCGACCCGAACCGGAACCCGGTTTAAGACCCGGTTTG 1871
Query 1890 AGGTCGAGTTTGGTAGATTGGGTTTGGGGTTTGTATAGAGAAGGGAAGTTATTGACCGCC 1949
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1872 AGATCGAGTTTGGTAGATTGGGTTTGGGGTTTGTATAGAGAAGGGAAGCTATTGACGGCG 1931
Query 1950 GTGGACGAGCGGTTGAGTGAGTTTAACCCGGAGGAGATGAGTCGGGTTATGATGGTGGGC 2009
|||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 1932 GTGGACGAACGGTTGAGTGAGTTTGACCCGGAGGAGATGAATCGGGTTTTGATGGTGGGC 1991
Query 2010 CTTGCTTGTTCACAACCCGATCCGGTCAC-CAGGCCCACTATGAGAAGTGTGGTTCAGAT 2068
||||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 1992 CTTGCTTGTTCTCAACCCGATCCGGTGACTC-GGCCCACTATGAGAAGTGTGGTTCAGAT 2050
Query 2069 TCTTGTTGGTGAAGCTGATGTGCCGGAAGTTCCGATTGCGAAACCGTCGTCGTCGATGAG 2128
|||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||
Sbjct 2051 TCTTGTTGGTGAAGCTGATGTGCCGGAAGTTCCGGTTGCGAAGCCGTCTTCGTCAATGAG 2110
Query 2129 TTTTAGTACGTCGGAGTTATTGCTTACGTTACAAGACAGTGTATCGGACTGTAATGAAGT 2188
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2111 CTTTAGTACGTCGGAGTTATTGCTTACGTTACAAGACAGTGTATCGGACTGTAACGAAGT 2170
Query 2189 TTTGGCTCCGATTTCAACGACTTCTTGTTCCTCGTCGGAACACGACATCTTCATTGTCGG 2248
|||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 2171 TTTGGCTCCGATCTCAACGACTTCTT---CGTCGTCGGAACATGACATCTTCATTGTCGG 2227
Query 2249 CAAGGACCGATCGGTTTGAAA-TAA-ATT-ATTCAAATGACAA-TTAAT-ATAAAATACG 2303
|||||| |||||||||| ||| ||| ||| ||| ||||||||| ||||| ||||||| ||
Sbjct 2228 CAAGGATCGATCGGTTTAAAAATAATATTTATTTAAATGACAAATTAATTATAAAATTCG 2287
Query 2304 AAGCACAATTTTGTACGtaaattgaaaataaacaaaaaccaaaaac---atactaattgt 2360
||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 2288 AAGCAAAATTTTGTACGTAAATTGAAAATAAACAAAATCCAAAAACTTTATACTAATTTT 2347
Query 2361 aaaaa-tGTTGGATTTACATGTATATTTTCTGTTCGATTTTAATAATTCTTGGTTTTGGA 2419
||||| ||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 2348 AAAAAATGTTGGAAGTATATGTATATTTTCTGTTCGATTT-AATAATTCTTGGTTTTGGA 2406
Query 2420 ACCTC 2424
|||||
Sbjct 2407 ACCTC 2411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91454678245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5