BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03150.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487085 jgi|Araly1|487085|fgenesh2_kg.6__219__AT5G03150.1 3175 0.0
Ahg937195 jgi|Araly1|937195|scaffold_501386.1 374 2e-102
> Ahg487085 jgi|Araly1|487085|fgenesh2_kg.6__219__AT5G03150.1
Length=2006
Score = 3175 bits (1719), Expect = 0.0
Identities = 1921/2016 (95%), Gaps = 23/2016 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaCTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTC-AGCATATTAAACCCTA 59
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1 AAAAAAACTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTCTA-CAAATTAAACCCTA 59
Query 60 ATTAACTATCTCTTTTGTTTGTATACTGTTATAAACCTCCTGATCATCTTCTTGTTTTCT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 ATTAACTATCTCTTTTGTTTGTATACTGTTCTAAACCTCCTGATCATCTTCTTGTTTTCT 119
Query 120 TGCAAGATTTTATaaaaaaaaaaCAAAACCCAGCTGTTCTTGTTCTTGTTCTTTAGCTCC 179
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 TGCAAGATTTCAT---AAAAAAACAAAACCCAGCTGTTTTTGTTCTTGTTCTTTAGCTCC 176
Query 180 GATCCGTTTTAAATTAAAACACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 239
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GATCCGTTTCAACTTAAATCACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 236
Query 240 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCTTCAGCAGCAGA 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 237 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCCTCAGCAGCAGA 296
Query 300 TCCCTGACCTTAACCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCATCAG 359
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TCCCTGACCTCAACCCTAATTCTAACCCTAACCCAAATGTGAAACCAAACTCTTCATCAG 356
Query 360 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 416
Query 420 CGCCAACAACACTCATGGCAACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCCAACAACACTCATGGCGACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 476
Query 480 AAAGGGACCAGAATTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGC 539
||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 477 AAAGGGATCAGAACTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAAGCTGAAGC 536
Query 540 AACGGTCCAAACAAGAAGTGATAAAGAAGAAAGTATACATATGTCCTATCAAGACTTGTG 599
|||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 537 AACGATCCAAACAAGAGGTGATAAAAAAGAAAGTATACATATGCCCTATCAAGACTTGTG 596
Query 600 TACACCATGATGCCTCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCC 659
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 TACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTATAGCC 656
Query 660 GCAAACACGGTGAAAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 GCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 716
Query 720 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCA 779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 717 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGCGAGTATAAATGTGACTGTGGCA 776
Query 780 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 777 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTGACTG 836
Query 840 AGGAAGGAGCGAGGATGAGTTCACTTAGTAACAACAATCCGGTGATCTCTACGACGAATC 899
| ||||| ||||||||||||||||| |||| |||| ||| |||||||||||||||||||
Sbjct 837 AAGAAGGTGCGAGGATGAGTTCACTAAGTAGTAACATTCCTGTGATCTCTACGACGAATC 896
Query 900 TGAATTTTGGAAATGAGTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTAC 959
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 897 TGAATTTTGGAAACGATTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTTC 956
Query 960 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTCTAGGGTTTG 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTTTAGGGTTTG 1016
Query 1020 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1076
Query 1080 CCGGCAACCACCACCTCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1139
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCGGCAACCACCACCCCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1136
Query 1140 ACCAATTCCAAATTCCAATGACTTCCACAAACCCTAGTCTCACCTTATCATCATCCTCAA 1199
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 ACCAATTCCAAATTCCAACGACTTCCACAAACCCTAATCTCACCTTATCATCATCCTCAA 1196
Query 1200 CATCACAACAAACCTCAGCTTCACTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1259
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1197 CATCACAACAAACATCTGCTTCTCTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1256
Query 1260 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTCTCTCCAATGTCTGCCA 1319
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1257 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTGTCTCCAATGTCTGCAA 1316
Query 1320 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTAGAAGCAATTCCTCCACCGCTC 1379
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1317 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTCGAAGCAATTCCACCACCGCTC 1376
Query 1380 CGTCATTCTTCGCCGGCCCAACAATGACATCCTCCTCGGCCACCGCTTCTCCTCCTCCT- 1438
|||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1377 CGTCCTTCTTCGCAGGCCCAACAATGACATCATCCTCAGCCACCGCTTCTCCTCCTCCTC 1436
Query 1439 -----AGATCGTCTTCTCCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1493
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 CTCCTAGATCGTCTTCACCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1496
Query 1494 TCTTAAGAGAGAATCATAATCGTGCTCCTCCTCCTCTTAGTGGTGTCTCCACTAGTAGTG 1553
||| ||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 1497 TCTCAAGAGAGAATCCCAATCTTGCTCCCCCTCCTCTTAGTGGTGTCACCACTAGTAGTG 1556
Query 1554 TGGATAATAATCCCTTTCAATCGAACCGATCGGGTCTAAACCCGGCTCAACAGATGGGTC 1613
|||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||
Sbjct 1557 TGGATAATAATCCCTTTCAATCGAACCGGTCGGGTCTAAACCTGGTTCAACAAATGGGTC 1616
Query 1614 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1676
Query 1674 CGTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAG 1733
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CCTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAA 1736
Query 1734 GTACTGTGT--ggg--gggg-ACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1788
|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1737 ATACTGTGTATGGGCCGGGGGACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1796
Query 1789 AGGAGACAAGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCGGAATGTGGGGACAA 1848
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1797 AGGAGACAGGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCTGAATGTGGGGACAA 1856
Query 1849 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTTTTACTATGT 1908
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1857 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTT--ACTATGT 1914
Query 1909 TTATGATTATCGCAATTCACATAATATATACCACCATGACATGCATGGATATGTATTTCC 1968
|| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1915 TTTTGATTATCGCCAGTCACATAATATATACCA---TGACATGCATGGATATGTATTTCC 1971
Query 1969 GACATTGTCGTTTTGTAAATGTTG-TTTATTTTTTC 2003
||| ||||||||||||||||||| ||| |||||||
Sbjct 1972 GACGTTGTCGTTTTGTAAATGTTAATTT-TTTTTTC 2006
> Ahg937195 jgi|Araly1|937195|scaffold_501386.1
Length=1393
Score = 374 bits (202), Expect = 2e-102
Identities = 432/540 (80%), Gaps = 27/540 (5%)
Strand=Plus/Plus
Query 313 CCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCA-TCAGCCAAGAAGAAGA 371
||| ||| ||||||||||||| ||| | | ||| ||| | | |||||||||| |||||
Sbjct 89 CCCAAATCCTAACCCTAACCCTAAT-C-ATACC-TCCTC-TAACTCAGCCAAGAGGAAGA 144
Query 372 GAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTATCGCC-AACAACA 430
|||||| || || | ||||||||||||||| || ||||||||||||||||| ||| |
Sbjct 145 GAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCTCTATCGCCAAAC-TCC 203
Query 431 CTCATGGCAACAAA-CAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAA-AGGGACC 488
|||||||| ||||| | ||||| | |||||||| ||||||||||||||| || || ||||
Sbjct 204 CTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT-AAGAGAGACC 261
Query 489 AGAA-TTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGCAACGGTCC 547
|||| || || || || || | ||||| |||||||||||||||||||||||| || |
Sbjct 262 AGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGCTAAAGCAAAGG-AC 319
Query 548 AAACAAGAAGTGA-TAAAGAAGAAAGTATACATATGTCCTA-TCAAGA-CTTGTGTACAC 604
||||||| || | | ||||| ||||| ||||| ||||| | |||| | || ||||||
Sbjct 320 AAACAAGGAGCAAGTGAAGAAAAAAGTGTACATCTGTCC-AGAGAAGAGC-TGCGTACAC 377
Query 605 CATGATGCC-TCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCCGCAA 663
||||| || || | ||||| || ||| | || || |||||||| || | |||| | ||
Sbjct 378 CATGA-CCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATTTCAGCAGAAA 436
Query 664 ACACGGTGA-AAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCA-GTCT 721
||| ||||| ||| |||||||| ||||| |||||||| |||||||| |||| ||| |||
Sbjct 437 ACATGGTGAGAAA-AAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCTG-TCATGTCC 494
Query 722 GATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCAC 780
|||||||| || ||| || || | |||||||||| | || || | |||||||||||| ||
Sbjct 495 GATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTGACTGTGGTAC 553
Query 781 GTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTGA 840
| || |||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||
Sbjct 554 CCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACGCCTTAGCTGA 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5