BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03160.1
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939693 jgi|Araly1|939693|scaffold_600237.1 2512 0.0
> Ahg939693 jgi|Araly1|939693|scaffold_600237.1
Length=1496
Score = 2512 bits (1360), Expect = 0.0
Identities = 1452/1497 (97%), Gaps = 3/1497 (0%)
Strand=Plus/Plus
Query 152 TGTATGTATATGTATTG-AAATCGAGAATGGATCTGTTCCGAGTTTGGTCAGGGATGGAT 210
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTATGTATATGTATTGAAAATCGAGAATGGATCTGTTCCGAGTTTGGTCAGGGATGGAT 60
Query 211 TTCTTAGCTTGGAGAGGAATGGCTTACACActtcttcttctcaacttcgtctttgcttgc 270
||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 61 TTCTTAGCTTGGAGAGGAATGGCTTACACTCTTCTTCTGCTTAACTTTGTCTTTGCTTGC 120
Query 271 caacttcttcttctCCAACCTCTCGTTTCCGCTCTAGATGGTCAATCGGTAGATGCTGCT 330
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 CAACTTCTTCTTCTCCAACCTCTCGTTTCCGCTTTAGATGGTCAATCGGTAGATGCTGCT 180
Query 331 GAGTTATTCGAGAGAGCTTCACAAAGTATCAAGGTTAAGCGTTATAGTGATGCCCTCGAT 390
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 181 GAGTTATTTGAGAGGGCTTCACAAAGTATCAAGGTTAAGCGTTTTAGTGATGCACTCGAT 240
Query 391 GATCTGAATGCAGCCATTGAAGCAGACCCTGCGCTTTCAGAAGCTTATTTTAAGCGTGCC 450
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 GATCTGAATGCAGCCATAGAAGCAGACCCTGCACTTTCTGAAGCTTATTTTAAGCGTGCC 300
Query 451 TCTGTGCTTCGTCATTTTTGCAGATACGAAGACTCTGAGAATAGTTACCAGAAATATCTG 510
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 301 TCTGTGCTTCGTCATTTTTGCAGATACCAAGACTCTGAGAATAATTACCAGAAATATCTG 360
Query 511 GAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAG 570
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATTTAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAG 420
Query 571 AGTGCTTTGGAGACTGCCTCGACTCTGTATGAATCAAAGGATATTGCGAAAGCTCTTGAA 630
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 421 AGTGCTTTGGAGACTGCCTCAACTCTGTACGAATCAAAGGACGTTGCGAAAGCTCTTGAA 480
Query 631 TTTGTTGATAAAGTTGTTCTTGTCTTCTCTCCAGCTTGCTCTAAGGCAAAGCTTCTCAAA 690
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 TTTGTTGATAAAGTTGTTCTTGTCTTCTCTCCGGCTTGCTCTAAGGCAAAGCTTCTCAAA 540
Query 691 GTGAAGCTCCTTATGGTGTCTAAAGACTACTCAGGTGCAATTTCTGAGACTGGTTATATT 750
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 541 GTCAAGCTCCTTATGGTGTCTAAAGACTACTCGGGTGCAATTTCCGAGACTGGTTATATT 600
Query 751 CTCAAGGAAGATGAAAATAACCTCGAGGCGTTGCTCCTTCGTGGCCGTGCCTACTACTAT 810
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 CTCAAGGAAGATGAAAATAACCTCGAGGCTTTGCTCCTTCGTGGACGTGCCTACTACTAT 660
Query 811 TTGGCGGATCATGATATCGCCCAAAGGCATTACCAAAAAGGGCTTCGTCTTGATCCGGAA 870
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTAGCAGATCATGATATTGCCCAAAGGCATTACCAAAAAGGGCTTCGTCTTGATCCGGAA 720
Query 871 CACAGTGAACTGAAGAAAGCATACTTCGGATTGAAAAAACTGCTCAAGAAAACAAAAAGC 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CACAGTGAACTGAAGAAAGCATACTTCGGATTGAAAAAACTGCTCAAGAAAACAAAAAGC 780
Query 931 GCAGAAGATAATGCAAACAAAGGAAAGTTGCGAGTTTCAGCAGAGGAATATAAAGAAGCT 990
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAGAAGATAATGCAAGCAAAGGAAAGTTGCGAGTTTCAGCAGAGGAATATAAAGAAGCT 840
Query 991 ATTGCTCTGGACCCTGAACACACGGCAAATAACGTTCATCTCTATCTTGGACTATGCAAG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTGCTCTGGACCCTGAACACACGGCAAATAACGTTCATCTCTATCTTGGACTATGCAAG 900
Query 1051 GTCTCAGTCAGGCTCGGCCGTGGAAAAGACGGCTTAAATAGCTGTAATGAAGCACTTAA- 1109
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 901 GTCTCAGTCAGGCTCGGCCGTGGAAAAGACGGCTTAAATAGCTGTAATGAAGCA-TTAAA 959
Query 1110 CATCGATGCAGAACTGATTGAAGCTTTACATCAGAGAGGAGAAGCTAAACTGTTGCTTGA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CATCGATGCAGAACTGATTGAAGCTTTACATCAGAGAGGAGAAGCTAAACTGTTGCTTGA 1019
Query 1170 AGATTGGGAAGGAGCTGTGGAGGATTTAAAGCAAGCTGCTCAAAACTCTCAGGACATGGA 1229
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1020 AGATTGGGAAGGAGCTGTGGAGGATTTGAAGCAAGCCGCTCAAAACTCTCAGGACATGGA 1079
Query 1230 AATTCATGAATCACTTGGTAAAGCAGAGAAAGCACTGAAGATGAGCAAACGAAAAGATTG 1289
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AATTCATGAATCACTTGGTAGAGCAGAGAAGGCACTGAAGATGAGCAAACGAAAAGATTG 1139
Query 1290 GTATAAGATTCTTGGAATTTCCAGAACCGCCTCTATCTCAGAAATCAAAAAAGCTTACAA 1349
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 GTATAAGATTCTTGGAATTTCCAGAACCGCCTCTATCGCAGAAATCAAAAAAGCTTACAA 1199
Query 1350 GAAGCTTGCTCTTCAATGGCATCCCGATAAAAACGTAGGCAATAGAGAAGAAGCTGAGAA 1409
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1200 GAAGCTTGCTCTTCAATGGCATCCCGATAAAAACGTCGACAATAGAGAAGAAGCTGAGAA 1259
Query 1410 CAAATTCCGAGAAATCGCTGCAGCTTATGAGATTCTTGGAGATGACGATAAGCGGGCGAG 1469
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1260 CAAATTCCGAGAAATCGCTGCAGCTTATGAGGTTCTTGGAGATGATGATAAGCGGGCGAG 1319
Query 1470 ATTTGACAGAGGAGAGGATCTTGAAGATATGGGTGGAGGCGGCGGTGGAGGATATAATCC 1529
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1320 ATTTGACAGAGGAGAGGATCTTGAAGATATGGGTGGAGGCGGCGGTGGAGGATTTAATCC 1379
Query 1530 GTTCCAtggtggtggtggtggtggacaacaatacactttccatttcgagggtggttttcc 1589
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 GTTTCATGGTGGTGGTGGTGGTGGACAACAATACACTTTCCATTTCGAGGGCGGTTTTCC 1439
Query 1590 tggtggtggtggcggttttggtggtttcggtttCTAACTTGAACAACATGATGGAAT 1646
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1440 TGGTGGTGGTGGCGGTTTTGGCGGTTTCGGTTTCTAACTTGAACAACATGATGGAAT 1496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5