BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03170.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487087 jgi|Araly1|487087|fgenesh2_kg.6__221__AT5G03170.1 1373 0.0
> Ahg487087 jgi|Araly1|487087|fgenesh2_kg.6__221__AT5G03170.1
Length=900
Score = 1373 bits (743), Expect = 0.0
Identities = 849/901 (94%), Gaps = 4/901 (0%)
Strand=Plus/Plus
Query 5 ACAACAACTACAACAATGGCTACTTCAAGAACATTCATTTTC-TCTAATCTCTTCATCTT 63
|||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 1 ACAATAACTACAACAATGGCTACTTCAAGAACATTCA-TTTCTTCTAATCTTTTCATCTT 59
Query 64 CTTCCTCGTTATAGCCACTACTTATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAAC 123
||||||| | | || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCCTCATCGTGGCTACTACCAATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAAC 119
Query 124 GAACATAACCGCAATCCTAGAAAAGGCTGGTCAATTCACATTGTTCATAAGACTTCTTAA 183
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 120 CAACATAACCGCAATCCTAGAAAAGGCGGGTCAATTCACCTTGTTCATAAGACTTCTTAA 179
Query 184 AAGCACTCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTT 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGCACCCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTT 239
Query 244 AACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTAAACTC 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 AACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTGAACTC 299
Query 304 ATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCTTACCTACACTCATAAC 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 300 ATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCCTACCTACACTCATTAC 359
Query 364 CATGCCTCAGTTTCAAACCGTTAGTAACCCTTTACGCACGCAAGCTGGAGATGGCCAAAA 423
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 360 CATGCCTCAGTTTCAAACCGTTAGTAACCCCTTACGCACGCAAGCTGGTGATGGGCAAAA 419
Query 424 CGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACTGGAGT 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACCGGAGT 479
Query 484 TGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTGGCCGTTTATCAGGT 543
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 480 TGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTCGCTGTTTATCAGGT 539
Query 544 TGATCAAGTTTTGCTGCCATTAGCCATGTTTGGATCAAGCGTGGCTCCTGCTCCGGCCCC 603
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 540 CGATCAAGTTTTGTTGCCATTAGCCATGTTTGGATCAAGCGCGGCTCCTGCTCCGGCGCC 599
Query 604 TGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGATTC 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 TGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGGTTC 659
Query 664 TACTGATTCATCTGATGCAGAGAGGACTGGATTCGGGTTTGGGATCAGAATCACTACCGT 723
|||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| |||
Sbjct 660 TACTGATTCATCTGATGCAGAGAGAACTCGATTCGGGTTTGGGGTCAGAATCGCTATCGT 719
Query 724 TGCAGCCATTGCTGCTTCTTCTTCTCTGTGGATATAACTCGAGAGAGAGCTTTTCTTGAG 783
||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 720 CGCAGCCATTGCTGCTGCTTCTTCTCTGTCGATATAACTCGAGAGAGAGCTTTCCTTGAG 779
Query 784 TCTCCACATTTGGAATTTTAAGAATAACGAGAGCTTTAAGTTTTTGTTGTACTTTGAGAT 843
|||||||||| |||||||||| || |||||||||||||| ||| || |||| |||||||
Sbjct 780 TCTCCACATTGGGAATTTTAATAACAACGAGAGCTTTAAAATTT-GTCGTACATTGAGAT 838
Query 844 TGTTTTATAGATG-TGTTATTACGTGTGATTGTTTTGATTAAGATTGCACACAACttttt 902
||| ||||||||| |||| ||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 839 TGTGTTATAGATGGTGTTGTTATGTGTTATTGTTTTGATTAAGATTGCACAAAACTTTTT 898
Query 903 t 903
|
Sbjct 899 T 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5