BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03180.2
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487088 jgi|Araly1|487088|fgenesh2_kg.6__222__AT5G03180.1 2381 0.0
Ahg478298 jgi|Araly1|478298|fgenesh2_kg.3__999__AT3G09760.1 448 9e-125
> Ahg487088 jgi|Araly1|487088|fgenesh2_kg.6__222__AT5G03180.1
Length=1690
Score = 2381 bits (1289), Expect = 0.0
Identities = 1478/1566 (94%), Gaps = 25/1566 (2%)
Strand=Plus/Plus
Query 7 AAATTAATCCCAAAGATTGATACTTTGTTTTCCTGAGATTCTTCTTTTACT-TCACTGTT 65
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 143 AAATTAATCTCAAAGATTGATACTTTGTTTTCCGGAGATTCTTCTTTTACTAT-ACTGTT 201
Query 66 TCTGGGTTTTG--T-AATTTGATGGTGATGGATGATAAAGATAAATATCGCGAAGTAGTA 122
||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 202 TCTGGGTTTTGTTTGAATTTGATGATGATGGATGATAAAGATAAACCTCGCGAAGTAGTA 261
Query 123 GAACATTGGTCTTGCGAAGGTACTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 182
|||||| |||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 262 GAACATAGGTCCCATGAAGATATTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 321
Query 183 ACAGAAATGCTATCACCGAGCCAACATCAACGATGGCGAGGCCTTGTGTTAGATATACAA 242
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 322 ACAGAAATGCTATCACCAAGCCAACACCAACGATGGCGAGGTCTTGTGTTAGATATACAA 381
Query 243 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCCGTT 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 382 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCTGTT 441
Query 303 TCCAAAAGGTTCAAGTTTTCTCCAATGTCCAGCCCTAGAACTGGGAGACGTGTTGGATCA 362
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 442 TCCAAAAGGTTCAAGTTTTCTCCAATGTCAAGCCCTAGAATTGGGAGACGTGTTGGCTCC 501
Query 363 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAA--TCAGAAGAATTTCAAAAACAGGAACC 420
|||||||||||||||||||||||||||||||| || || | ||| |||||||||||||
Sbjct 502 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAATCTCCTAA-ACTTT-AAAAACAGGAACC 559
Query 421 ACAGTGCAGATATTGAGGAAGGTGTTGTGTCCCCTTTAGGAGATGGTA-GTGATAAGTCT 479
||| ||||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||
Sbjct 560 ACAATGCAGATATTGAGGAAGGTGTTGTGTCTCCTTCAGGAGATGGTACG-GATAAATCT 618
Query 480 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATCTAAGAAGACA 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 619 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATATAAGAAGACA 678
Query 540 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCCGTTGAGGTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 679 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCGGTTGAGGTT 738
Query 600 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTACACGCTCTGTC 659
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 739 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTC 798
Query 660 CCCACATTCTTCAACAAAGATGGAAGTGTAAAGCCGTCAAGTGTTTTCCGCGTGATTCCT 719
|| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 799 CCTACATTCTTCAACAAAGATGGAAGTGTAAAGCAGTCAGGTGTTTTCCGCGTGATTCCT 858
Query 720 ACTCCGTCTCGTGGGGATGAGAAGAGACTAGAGATGACGCAGGCATCGAAATTGAGTAAA 779
||||| |||||||||||||||||||| |||||||||| ||||||||| || |||
Sbjct 859 ACTCCATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGCATC------GA--AAA 910
Query 780 CTCCACGATGAAAATGATGATGGTGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGA 839
| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 911 -T-GA--ATGAACATGATGATGGCGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGA 966
Query 840 ATCTGTATGGTTGAAATGGAAGAAGATGAAGAAGCTTTTAAGATGGAATGTATGTGCAAA 899
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 967 ATCTGTATGGTTGAAATGGAAGAAGAAGAAGAAGCTTTTAAGATGGAATGTATGTGCAAA 1026
Query 900 GGGGAACTAGCTCTTGCCCACAAAACGTGCACTATCAAATGGTTTACAATTAAAGGGAAC 959
|||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1027 GGGGAATTGGCTCTTGCCCACAAAACGTGCACGATCAAATGGTTTACAATTAAAGGGAAC 1086
Query 960 ATAACATGTGATGTGTGTAAGCAAGAGGTGAGAAATCTCCCGGTTACCCTTCTACGTGTG 1019
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1087 ATAACATGTGATGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTG 1146
Query 1020 CAGGATTCTCAAAACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1079
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 CAGGATTCTCAAGACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1206
Query 1080 GTATGGCAAGATATTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1139
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 GAATGGCAAGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1266
Query 1140 GAACAGCTTCTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1199
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GAGCAGCTTTTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1326
Query 1200 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTG 1386
Query 1260 TGGATCTACGCCACCGTTCAGTTCGGTTTTGTGGTCCTTTTCGCTCAGCTTTTCTACAGA 1319
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1387 TGGATCTACGCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATCTTTTCTACACA 1446
Query 1320 GTTGTAAGATTTGATGTGAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1379
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GTTGTAAGATTTGATGTTAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1506
Query 1380 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1566
Query 1440 AATTCCCACCTGCCAGAAGAGCCAGCAAGTACTCAGGTGGTTTGACAGCAGCGTAGATCT 1499
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1567 AATTCCCACCAGCCAGAAGAGCCAGCAAGCACTCTGGTGGTTTGACAGCAGCGTAGATCT 1626
Query 1500 TTTGAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCAATTAACCGGTCGGGATT 1559
| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1627 T--GAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCGATCAACCGGTCCGGATT 1684
Query 1560 CGGTTT 1565
||||||
Sbjct 1685 CGGTTT 1690
> Ahg478298 jgi|Araly1|478298|fgenesh2_kg.3__999__AT3G09760.1
Length=1778
Score = 448 bits (242), Expect = 9e-125
Identities = 541/680 (80%), Gaps = 41/680 (6%)
Strand=Plus/Plus
Query 776 TAAACTCCACGATGAAAATGATGATGGTGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTG 835
|||||| |||| | |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 869 TAAACTTAACGACGCGAATGTTGATGGCGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTG 928
Query 836 TAGAATCTGTATGGTTGAAATGGAAGAAGATGAAGAAGCTTTTAAGATGGAATGTATGTG 895
||||||||| |||| ||| ||| ||||||| |||||| || |||||||||||||||||
Sbjct 929 TAGAATCTGCCTGGTAGAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTATGTG 988
Query 896 CAAAGGGGAACTAGCTCTTGCCCACAAA-ACGTGCACTATCAAATGGTTTACAATTAAAG 954
| ||||||||||||||||||||||||| | || || ||||||||||| || |||||||
Sbjct 989 TAGAGGGGAACTAGCTCTTGCCCACAAAGAA-TGTACAATCAAATGGTTCACCATTAAAG 1047
Query 955 GGAACATAACATGTGATGTGTGTAAGCAAGAGGTG-AGAAATCTCCCGGTTACCCTTCTA 1013
| ||| |||||||||||||| || |||||||| |||| |||||| || |||||||||
Sbjct 1048 GAAACCGCACATGTGATGTGTGCAAACAAGAGGTTCAGAA-TCTCCCTGTGACCCTTCTA 1106
Query 1014 CGTGTGCAGGATTCTCAAAACCGT-TCTAGAGCAGCCAGGGATATCGAGATTTCACGGTT 1072
|| |||||| |||||| || | | |||| |||| ||| |||| | ||| |
Sbjct 1107 CGCGTGCAGAATTCTCGGGGTAGTAT-TGGAGCT-CCAG--ATACCGAGGCTGCACACTA 1162
Query 1073 CAATAATGTATGGCAAGATATTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTG 1132
|| | | ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CAGT--T-TATGGCAGGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTG 1219
Query 1133 TTTCCTTGAACAGCTTCTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACC 1192
||| || || ||||||||| ||| | | ||| |||| ||||| ||||| | |||||||
Sbjct 1220 TTTTCTCGAGCAGCTTCTGCTTACAAAAATGCAATCCGGCGCCATTGCAGTTTCTTTACC 1279
Query 1193 GTTCTCTTGCATTATCGGTCTTCTT-GCATCAATGATATCAACAACAATGGTGAAGAAGA 1251
||||||||| || | ||||| ||| || || |||| ||||||||||||||| ||||||
Sbjct 1280 ATTCTCTTGCGTTCTTGGTCT-CTTTGCTTCGATGACGTCAACAACAATGGTGCAGAAGA 1338
Query 1252 -ACTATGTATGGATCTACGCCACCGTTCAGTTCGGTTTTGTGGTCCTTTTCGCTCA-GCT 1309
| ||||| ||||| |||||||| |||||||||| |||| || ||||| |||| | |
Sbjct 1339 GA-TATGTCTGGATTTACGCCACAACTCAGTTCGGTCTTGTTGTTTTTTTCTCTCACG-T 1396
Query 1310 TTTCTACAGAGTTGTAAGATTTG-ATGTGAAGCAGCCGGTAATGTG-C-ATTGTCTTAGC 1366
||||| || | ||| | || | ||| |||||||| |||| | ||| |||||||
Sbjct 1397 TTTCTTCACA-TTG---G-TTCGCATG-----CAGCCGGT--TGTGGCCATTCTCTTAGC 1444
Query 1367 CACTAT-GATCGGATTTGGACTCACCATGACCGGCACAACAG--CTATTAACGAGTATTT 1423
||| || | | || |||||||||||||||| ||| ||||||| ||| | ||||| |||
Sbjct 1445 CACAATTGTTGGG-TTTGGACTCACCATGAGCGGTACAACAGGTCTAGT--CGAGT-TTT 1500
Query 1424 GAAA-TGGAGGAGAAGCAAT 1442
||| |||||||||||||||
Sbjct 1501 CAAAATGGAGGAGAAGCAAT 1520
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5