BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03190.2
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487089 jgi|Araly1|487089|fgenesh2_kg.6__223__AT5G03190.2 2567 0.0
> Ahg487089 jgi|Araly1|487089|fgenesh2_kg.6__223__AT5G03190.2
Length=1836
Score = 2567 bits (1390), Expect = 0.0
Identities = 1706/1853 (92%), Gaps = 44/1853 (2%)
Strand=Plus/Plus
Query 2 TCTTCTTCCCCaaaaaaaaaaCAAGACAGAGGAAGAGAATCACGAAACCAT-AGTCCCAA 60
|||| |||||||||||||||| || ||||||||||| ||||||||||| | ||||||||
Sbjct 1 TCTTTTTCCCCAAAAAAAAAA-AA-CCAGAGGAAGAG-ATCACGAAACCCTAAGTCCCAA 57
Query 61 ACCCTTCGAATCTATAAGCATTTCTCAAACACAATCAAGAAACTGTGTTTAGCTTTTAGA 120
| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||
Sbjct 58 ATCCTTCGAATCTATAAGCGTTTCTCAAACATAATCAAGAAACTGTATTTAGCTTTTGGA 117
Query 121 TTTCTACAAGCATGTAAGACGAGATTTTGTTTCttttttttCTGCATGGTGGATCGAACG 180
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
Sbjct 118 TTTCTACAAGCATGTAAGACGAGATTTTGCTTCTTTTGTTT-TGCATGGTGGATCGATCT 176
Query 181 GTGAGAATGGGGACGGAGGTGAAGTCGATTAGGGTTCCAAGAAGGGTCTGGTTTGGATCA 240
|||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 177 GTGAGAATGGGGACAGAGATGAAGTCGATTAGGGTTCCGAGAAGGGTCTGGCTTGGATCA 236
Query 241 CAAATATCTATAGTTCTCCTCGTGGGTGGAAACCATACCTCCTCCAGGCATGCTCTGTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CAAATATCTATAGTTCTCCTCGTGGGTGGAAACCATACCTCCTCCAGGCATGCTCTGTTT 296
Query 301 CGTGCTCTCATCATCGCCTCTGCTCTATCTGTTGTCCCTTTGTTGGAGTTAACCGCTAAA 360
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 CGTGCTCTCATCATTGCCTCTGCTCTATCTGTTGTCCCTTTGATGGAGTTAACCGCTAAC 356
Query 361 AATCACGTCTTTGGTGATCATGGAGCAGTGGATTTGGTCGATCTCGGCCGATTTGTTATT 420
||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
Sbjct 357 GATCGCGTCTTTGGTGATGATAGAGCAGTGGATTTGATCGATCTCGGCCGATTTGTTA-T 415
Query 421 C-CAGGACCGAAATTGTTCTTCCATAAGCTCGTTCAACCATTCTGGGGTAAAATTGAGAC 479
| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 416 CGCAGGACCGAAATTGTTCTTTGATAAGCTCGTTGTACCATTCTGGGGTAAAACTGAGAC 475
Query 480 AGAGAAGTATCCACAAGTGGTAATTGCTGATCTCGTTGATGAGCTCATGGGGTTAAAGCT 539
||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||
Sbjct 476 AGAGAAGTATCCACAAGTGGTGATTTCTGATCTAGTTGAAGAGCTGATGGGGTTAAAGCT 535
Query 540 ATTGCATTATGATGCTAAGATTCTCTGCATTGGT-CAGGGATCGGATTCTGCTGTTTCAG 598
||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||||| |
Sbjct 536 ATTGCATTATGATGCTAAGGTTCTCTGCATTGGTCCCGGG-TCGAATTCTGCTGTTTC-G 593
Query 599 G-GTTCAAAGAGATGGGTTTCTCAGTTGTTCAAGGGGTTCCTAAGCATCCATTGTTTTCC 657
| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 594 GCATTCAAAGAGATGGGTTTCTCAGATGTTCACGGGGTTCCTAAGCATCCATTGTTTTCC 653
Query 658 TTTTTCAGTAGGAAGCATGTCAACGAGCTTGAGCTTAGTGGTGACAAGTCTTTTGATTTC 717
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 654 GTTTTCAGTAGGAAGCATGTCAACGAGCTTGAGCTTAGTGGCGAAAAGTCGTTTGATTTC 713
Query 718 GTGCT-CTGTGGGGATGTTGATCAT-GTTGCTTCCCCTGCTCTTCTTGTGCTTGAGATGG 775
||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 714 GTG-TACTGTGGGGATGTTGATC-TAGTTGCTTCCCCTGCTCTTCTTGTGCTTGAGATGG 771
Query 776 AGCGGGTTCTGAAGCCTGGTGGAACCGGAGCAGTCCTTGTGAGTACTAATGCCAATCG-T 834
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 772 AGCGAGCTCTGAAGCCTGGTGGAACCGGAGCAGTCCTTGTGAGTACTAATGGCAA-CGAT 830
Query 835 CTTGTCAAATCCGTGACTTCGG---------GGCTTAAGCAGTCTGAGATAGTGCGTGTG 885
||||| ||||||| |||||||| ||||||| ||||| || |||||||||||
Sbjct 831 CTTGTTAAATCCGCGACTTCGGTTTCATTCTGGCTTAAACAGTCGGATATAGTGCGTGTA 890
Query 886 AACAACTTGGATAAGTTCACCGTCATTGTATTCAAGAGGAATGTAACGGAGACTGCTTAT 945
||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 891 AACTACTTGGATGAGTTCACCGTCATTGTATTCAAGAGGAATGTAACGGAAACTGCTCCT 950
Query 946 TGTATT-GGAAAGTCTCAGCTACCAAGAGATTGCAAATCTGTTGACACCAATAGACCTTA 1004
| |||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 951 TATATTGGGAAA-ACTCAGCTACCTAGAGATTGCCAATCTGTTGACACCAATAGACCTTA 1009
Query 1005 CACAGAGTTCATGGAACCTCTACTGGAGCAAAAGCCTGCTGATTTCCCAAAATCAGTAGC 1064
|| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1010 CATAGAGTTTATGGAACCTCTACTCGAGCAAAAGCCTGCTGATTTCCCAAAATCAGTCGC 1069
Query 1065 TTACTTACCTAAATTCCTTGATCTCTCTCTGAAAAAGAGCCTTGTCTACATTGACATTGG 1124
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1070 TTACTTGCCTAAATTCCTTGATCTCTCTCTGAAGAAGAGCCTTGTCTACATTGACATTGG 1129
Query 1125 AGCAGCCGAGCACATGGATGCTAATTTAACTCCAAACTGGTTCTTTCCGTTATACCCACT 1184
|||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1130 AGCAGCCGAGCATATAGATGCTAATTTAAATCCAAACTGGTTCTTTCCGTTATACCCACT 1189
Query 1185 CGACAGCAAAGCATTCAATGTCTACTTTGTCGACCACAACACTTCAGTAATGCTATCCTA 1244
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 CGACAGCAAGGCTTTCAATGTCTACTTTGTCGACCACAACACTTCAGTAATGCTATCATA 1249
Query 1245 TGTCAAGAAACCCGGCGTCACCTTTGTTTACCATCCGGATTTGGCTGAGAACAACTCGAC 1304
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1250 TGTCAAGAAACCCCGCGTCACCTTTGTTTACCATCCGGATTTGGCTGAGGACAACTCGAA 1309
Query 1305 AGGGAAAAAGATAACTCCGCTTGAACAGCTAGAACCATTTCCAGAAGATGAGAGATTCGA 1364
||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1310 AGGCAAAAAGATAACTCCGCTTGAACAGCTAGAACCATTTCCAGAAGATGAGGGTTTTGA 1369
Query 1365 TTTCCTTGCTTGGTTTGAGGAAACTGCGAAATACGCAGACTTTGTAGTCCTTAAGATGAA 1424
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1370 TTTCCTTGCTTGGTTTGAGGAAACTGCGAAATACGCAGACTTTGTGGTCCTTAGGATGAA 1429
Query 1425 CACAAACCA-AGTGGAAATGAAGTTCCTAACTGTTTTACTGGAAACAGGAGTCATATGCT 1483
||| || || |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1430 CAC-AAGCACAGTGGAAATGAAGTTCCTAACTGTTTTATTGGAAACAGGAGCCATATGCT 1488
Query 1484 ACGTGGATGAGCTTTTCCTCCGCTGTTCCAACCACAAGTCAGACTGCATCAACATGCTTC 1543
||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1489 ACGTGGATGAGCTCTTCCTCCGCTGCTCCAACCACAAACCAGACTGCATCAACATACTTC 1548
Query 1544 AAACTCTGAGAGCCAGAGGTGTGTTTGTTCATCAATGGTGGGAAGACTAAACCAATGTAA 1603
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1549 AAACTCTGAGAACCAGAGGTGTGTTTGTTCATCAATGGTGGGAAGACTAAACCAAGGT-- 1606
Query 1604 AACTCAATCTCGCTTCGCCTTAGTCTTATCTACGTCGA-TTCGTGTCTGTCTTTGTC-TC 1661
|||||||||| || ||||||| |||||||||| ||| | |||||||||||||||||| |
Sbjct 1607 AACTCAATCTGGCCTCGCCTTTGTCTTATCTATGTC-ATTTCGTGTCTGTCTTTGTCGT- 1664
Query 1662 AGTTGT-AATGCCATCACCTTCTGTGTTTGCCATAGTTGGTCCTCGGCCACCACAGCTCC 1720
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AGTT-TCAATGGCATCACCTTCTGTGTTTGCCATAGTTGGTCCTCGGCCACCACAGCTCC 1723
Query 1721 TGGCCAAGCACCTATAACTAAATAAGAAGCTGCCTATCTGTTTATCATTGCTATTTAA-- 1778
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1724 TGGCCAAGCACCTATTACTAAATAAGAAGCTGCCTGTCTGTTTATCATTGCTATTTAATT 1783
Query 1779 --GAACTCAGTTTCCACTT-ATA-ATATATTGAACCATAACGTTTTACGTCTT 1827
|||||||||||||| || ||| ||||||||||||||||| ||||| |||||
Sbjct 1784 AAGAACTCAGTTTCCAATTGATATATATATTGAACCATAACATTTTATGTCTT 1836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68600531245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5