BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03200.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487092 jgi|Araly1|487092|fgenesh2_kg.6__226__AT5G03200.1 1615 0.0
Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1 388 4e-107
> Ahg487092 jgi|Araly1|487092|fgenesh2_kg.6__226__AT5G03200.1
Length=1212
Score = 1615 bits (874), Expect = 0.0
Identities = 1096/1200 (91%), Gaps = 27/1200 (2%)
Strand=Plus/Plus
Query 90 TATCAACTGAATCACCGAAAAACCTCACCttttttctttttCCGATCATGGGGAATCTGA 149
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 25 TATCAACTGAATCA-CGAAAAACCTCACCTTTTTTCTTTTCCCGATCATGGGGAATCTGA 83
Query 150 TCAGTTTGATCTTCTGCTGCGGGAGAAGGCAGAGGAGCAATATTCCTCCGGCGATGGAAA 209
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 84 TCAGTCTGATCTTCTGCTGCGGGAGAAGGCGGAGGAGCAATATTCCTCCGGCGATGGAAA 143
Query 210 CGGCTCCTCTTGAACTCCCACCGAACAGATTTGTATTCGCCGCCGTGCCACCATATCTGA 269
|||||||||||||||||||| |||| ||||||||||||||||| | || || |||||||
Sbjct 144 CGGCTCCTCTTGAACTCCCAGCGAATAGATTTGTATTCGCCGCGGCACCGCCGTATCTGA 203
Query 270 ACCCTAACCCTAACTACGTTGACCAGTATCCAGGTAACTGCCTTCCTCCGCCAGTAACTG 329
||||||||||||||||| |||| |||||||||||| |||||||||||||||| | ||
Sbjct 204 ACCCTAACCCTAACTACTTTGATCAGTATCCAGGTTACTGCCTTCCTCCGCC-G---CT- 258
Query 330 AGCCGCCGATGCTACCGTACAATTTCAACCATTTGCATCACTATCCTCCCAACAGTTACC 389
||||| | ||| || |||| | || |||| || ||||| ||||||||| |||||||||
Sbjct 259 -GCCGCAGCCGCTGCCTTACAGTCTCCACCACTTACATCAATATCCTCCCCACAGTTACC 317
Query 390 AACTACCTCATCCTTTGTTTCACGGCGGTAGATACCCTATACTGCCGCCTCCTACGTACG 449
||||||||||||||||| ||| |||||||||| |||| || || |||||| | ||||||
Sbjct 318 AACTACCTCATCCTTTGATTCCCGGCGGTAGACACCCGATGCTACCGCCT-C--CGTACG 374
Query 450 TCCACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGAAGACTTTAACGC 509
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 375 TCCATGAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAAGGAGACTTTAAGGC 434
Query 510 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCATCCA 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 435 TCATACCCGACCCGGAGAATCCGAATCGACTTCTTGTCTCCTTCACATTTGATGCAGCCA 494
Query 570 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAGAG 629
|||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||
Sbjct 495 TGCCCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGAAGAAGAAGGCAATCTTAGAG 554
Query 630 CTACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAGAAGGACTTGGTCAGA 689
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 555 CAACAAAGGAAGATACTTTGCCTCCAATCACTTTTGATTTCGGAAAAGGACTTGGTCAGA 614
Query 690 AGTTCATACAATCATCTGGAACGGGTATAGACTTGACGGCGTTTAAAGATTCCGAGCTAT 749
||||||||||| |||||||||||||||| ||| ||||||| ||| ||||||||||||||
Sbjct 615 AGTTCATACAACCATCTGGAACGGGTATTGACCTGACGGCATTTGCAGATTCCGAGCTAT 674
Query 750 TCAAGGAGGTGGATACAGATGTCTTCCCGTTGGCGGTTAAGGCGGAGGCAACTCCAGCGG 809
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 675 TCAAGGGGGTGGATACAGATGTCTTCCCGTTGGCGATTAAGGCGGAGGCAACTCCAGCGG 734
Query 810 AAGAAGGAAAGTCTGGTTCCACCAATGTGCAGATTACTCAAGTGGTGTATACCAAGGAGA 869
||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 735 AAGAAGGAAAGTCGGGTTCCATGAATGGGCAGATTACTCAAGTGGTGTATACCAAGGAGA 794
Query 870 AAGGAGAGATTAAAATAGAAGTGGTGAAGCAGATACTATGGGTGAATAAGAGGAGGTATG 929
||||||||||||| |||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 795 AAGGAGAGATTAAGATAGAAGTGGTGAAGCAGATACTATGGGTGAATAGGATGAGATATG 854
Query 930 AGCTGCTTGAGATTTATGGGATTGAGAACACGGTTGATGGTTCCGATGAGGGAAAGGAAT 989
|| ||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 855 AGTTGCGGGAGATTTATGGGATTGAGAACACGGTTGATGGTTGCGACGAGGGAAAGGAAT 914
Query 990 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTGTTGTATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTA 974
Query 1050 TGTGTAGCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTGTGCCCAGTTTGCAGAC 1109
|||| |||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 975 TGTGCAGCGGGTGCGCAAAAGCGTTAAGGTTTCAGACACATCTGTGTCCAGTTTGCAGAC 1034
Query 1110 AACCTGTTGAGATGCTTTTGGAGATTA----A--C--AA----GAACGGATG-AAATGGA 1156
||||||| |||| |||||||||||||| | | || ||| || || |||||||
Sbjct 1035 AACCTGTAGAGAGGCTTTTGGAGATTACGGTAGACGGAAACAAGAAAGG-TGGAAATGGA 1093
Query 1157 GATGGAGAATGAACAAATTTAGTTAAGCAATCGACTTGTGTAATATATGCCATGCTTAAT 1216
|||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1094 GATGGAGATT-AACAAATTTAGTTAAGCAATAGACTTGTGTAATATAAGCCATGCTTAAT 1152
Query 1217 TAAGACGTAAAACGTTATGGTTCAATATAT-TAT-AAGTGGAAACTGAGTTCTTAAATAG 1274
|||||| ||||| ||||||||||||||||| ||| || |||||||||||||||||| |||
Sbjct 1153 TAAGACATAAAATGTTATGGTTCAATATATATATCAATTGGAAACTGAGTTCTTAATTAG 1212
> Ahg478299 jgi|Araly1|478299|fgenesh2_kg.3__1000__AT3G09770.1
Length=1582
Score = 388 bits (210), Expect = 4e-107
Identities = 577/741 (78%), Gaps = 77/741 (10%)
Strand=Plus/Plus
Query 452 CACCAGAAAGCCGTCACGATTCGTAACGATGTTAATCTGAAGAA-GAAGACTTTAACGCT 510
||||||||||||||||||||||||||||| |||||||| ||||| || ||| | | |||
Sbjct 666 CACCAGAAAGCCGTCACGATTCGTAACGACGTTAATCTTAAGAAAGA-GACCCTCAGGCT 724
Query 511 C-ATACCCGACCCGGAGAATCCGAATCGACTT-CTTGTCTCCTTCACATTTGATGCATCC 568
| |||||||||||| |||||| ||| ||| || ||||||||||| ||||||||| ||
Sbjct 725 TGA-ACCCGACCCGGATAATCCGGGTCG-CTTTCTCGTCTCCTTCACGTTTGATGCAACC 782
Query 569 ATGC-CCGGAAGGATCACAGTTGTTTTCTTTGCTACAGAAGATGCAGAATGTAATCTTAG 627
| | |||||||||| | || |||||||||||| |||| | ||| || ||||| |
Sbjct 783 GT-CTCCGGAAGGATTAGTGTCATTTTCTTTGCTAAAGAATCCGAAGATTGCAATCTCAC 841
Query 628 AGCTACAAAGGAAGATACTT-TGCCTCCAATCACTTTTGATTTCGGAGAA-GGACTTGGT 685
||| ||||||||||||| || |||| |||||||| | ||||||| |||| |||||||||
Sbjct 842 AGCGACAAAGGAAGATA-TTCTGCCACCAATCACCCTAGATTTCG-AGAAAGGACTTGGT 899
Query 686 CAGAAGTTCATACAATCATCTGGAACGGGTATAGACTTGACGG-CGTTT-A--AAGATTC 741
|||||||| | |||||||||||| | ||||||||||| ||| | ||| | ||| ||
Sbjct 900 CAGAAGTTTAAACAATCATCTGGTTCTGGTATAGACTTTTCGGTC-TTTGAGGAAG-TT- 956
Query 742 CGAGCTATTCAAGGAGGTGGATACAGATGTCT-TCCCGTTGGCGGTTAAGGCGGAGGCAA 800
||||| ||| ||| || | |||||||| ||| ||| |||||||||||||| || |||
Sbjct 957 -GAGCTGTTCGAGGCGGCGAATACAGATATCTATCCA-TTGGCGGTTAAGGCAGAAGCAG 1014
Query 801 CTCC---AGC-G-GAA-GAAG--GAAAG-TCTGGT-TCCACCAAT--G--TGC--AGATT 844
|||| || | ||| |||| ||||| | ||| || | || | ||| |||||
Sbjct 1015 CTCCCTCAGGTGAGAATGAAGAAGAAAGGT-TGGGATCGAAGAAAAAGAATGCGCAGATT 1073
Query 845 ACTCAAGTGGTGTAT-ACCAAGGAGAAAGGAGAGATTAAAAT-AGAAGTGGTGAAGCAGA 902
||||||| ||| ||| | ||||| |||||||||||||| || ||| |||||||||||||
Sbjct 1074 ACTCAAGCGGTTTATGAG-AAGGATAAAGGAGAGATTAAGATTAGA-GTGGTGAAGCAGA 1131
Query 903 TACTATGGGTGAAT--AAGAGGAGGTATGAGCTGCTTGAGATTTATGGGATTGAGAACAC 960
|||||||||| ||| || | || |||||| ||| |||||||||||||||| ||| ||
Sbjct 1132 TACTATGGGTTAATGGAACAAGA--TATGAGTTGCAGGAGATTTATGGGATTGGGAATAC 1189
Query 961 GGTTGA------TG-G--TTC--C-GATGA-G-----G----G--AAAGGAATGTGTTG- 995
||||| || | ||| | ||||| | | | ||| |||||||| |
Sbjct 1190 CGTTGAGGGCGATGAGGATTCAGCTGATGATGCTAATGATCCGGGAAAAGAATGTGT-GA 1248
Query 996 TATGCTTGTCTGAACCACGCGATACAACTGTTCTTCCTTGCAGACACATGTGTATGTGTA 1055
||||||||||||||||||| || || ||||||||||| ||| |||| ||||||||||| |
Sbjct 1249 TATGCTTGTCTGAACCACGAGACACGACTGTTCTTCCATGCCGACATATGTGTATGTGCA 1308
Query 1056 GCGGGTGCGCAAAGGCGTTAAGGTTTCAGACAAATCTG-TGCCC-AGTTTGCAGACAACC 1113
|||| ||||| |||| || |||||||||||||||| | ||||| | ||||||| |||||
Sbjct 1309 GCGGATGCGCTAAGGTATTGAGGTTTCAGACAAATC-GATGCCCGA-TTTGCAGGCAACC 1366
Query 1114 TGTTGAGATGCTTTTGGAGAT 1134
||| || | ||||||||||||
Sbjct 1367 TGTCGAAAGGCTTTTGGAGAT 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5