BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03204.1

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939698 jgi|Araly1|939698|scaffold_600242.1                        183    1e-46


> Ahg939698 jgi|Araly1|939698|scaffold_600242.1
Length=280

 Score =  183 bits (99),  Expect = 1e-46
 Identities = 107/111 (96%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTAGGATGATCGGACCATTCGAAACTGTACCGGCGATTCTTGTTTATCCGATGAGG  60
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  150  ATGGCGAGGATGATCGGACCATTCGAAACTGTACCGGCGATTCTTGTTTATCCGGTGAGG  209

Query  61   GTTTCAGCTTCGCCTTCGCTGGGGACAATTTATGAGGAACACGATGAGTAA  111
            |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  210  GTTTCAGCTTCGCCATCGCTGGGGACAATTTATGAGGAAGACGATGAGTAA  260



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3401663037


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5