BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03210.1

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939699 jgi|Araly1|939699|scaffold_600243.1                        279    1e-74


> Ahg939699 jgi|Araly1|939699|scaffold_600243.1
Length=238

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 212/239 (89%), Gaps = 13/239 (5%)
 Strand=Plus/Plus

Query  45   AATATCTAGT-GAAGCGA-ATATGTGTTTCTTTGATAATCGGTGCGATCAGAATCTGAC-  101
            |||||| | | ||| ||| | ||||||| |||||| || ||||||||| |||||||||| 
Sbjct  2    AATATCGA-TAGAATCGAGA-ATGTGTTACTTTGACAACCGGTGCGATAAGAATCTGACG  59

Query  102  --GGT---GGT-G--GTGGATGTGGCGTGGTGGATGGAGGCTGTTCCTCCACAAATCATT  153
              |||   ||| |  |||||||||||||||||||||||||||||||||||||| || || 
Sbjct  60   GTGGTGAAGGTGGATGTGGATGTGGCGTGGTGGATGGAGGCTGTTCCTCCACAGATAATA  119

Query  154  TCTCCGGCGAAGCCATCGGTTTCTCCGATTCTTGAGACGATTTTAGAAGGCGGAGAGACC  213
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  120  TCTCCGGCGAAGCCATCGGTTTCTCCAATTCTTGAGACGATTTTAGAAGGCGGAGAGACC  179

Query  214  GAAGAAGACAATCAAGAACAAGAAAACGAGGACGTGTAAATTGTAATGATCATTTTGTT  272
            |||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct  180  GAAGAAGACAATCACGAACAAGATAACGAAGACGTGTAAATTGTAATGATCGTTTTGTT  238



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19497505979


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5