BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03220.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349604 jgi|Araly1|349604|fgenesh1_pg.C_scaffold_6000197 832 0.0
Ahg892260 jgi|Araly1|892260|Al_scaffold_0006_256 802 0.0
Ahg905426 jgi|Araly1|905426|Al_scaffold_0003_2554 630 3e-180
Ahg939730 jgi|Araly1|939730|scaffold_600274.1 228 5e-59
> Ahg349604 jgi|Araly1|349604|fgenesh1_pg.C_scaffold_6000197
Length=507
Score = 832 bits (450), Expect = 0.0
Identities = 488/507 (96%), Gaps = 0/507 (0%)
Strand=Plus/Plus
Query 102 ATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAGGATTACTCA 161
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
Query 162 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 221
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 61 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
Query 222 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 180
Query 282 CTTTATCCCAAAGATTCTAATCTTGATTACAAGAATGAACTCAGGTCACTGAATAGAGAA 341
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
Query 342 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 401
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
Query 402 AAGAGGATTGGTGAAATTTCTTCTATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 461
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
Query 462 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 521
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AGACCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACGGAGG 420
Query 522 AAACAAGCTGTGGAAGACATTAAAAGAAGAAGAGAAGAAGCACAGCGACTTCTAAAGGAT 581
|||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAGCGACTTCTTAAGGAT 480
Query 582 GCTTACCTCACTTTAGATGGTCAATAG 608
|||||| |||||||||| |||||||||
Sbjct 481 GCTTACGTCACTTTAGACGGTCAATAG 507
> Ahg892260 jgi|Araly1|892260|Al_scaffold_0006_256
Length=504
Score = 802 bits (434), Expect = 0.0
Identities = 478/500 (96%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 102 ATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAGGATTACTCA 161
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
Query 162 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 221
|||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 61 GAAAACCCTAATTCTGCTCCTGAACCTCATCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
Query 222 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 281
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGAGGCAACTATACTACGGAGGATGTTCTTCCGAGCTTAGAAGAACAAGGAGTGCCTCAA 180
Query 282 CTTTATCCCAAAGATTCTAATCTTGATTACAAGAATGAACTCAGGTCACTGAATAGAGAA 341
||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
Query 342 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 401
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
Query 402 AAGAGGATTGGTGAAATTTCTTCTATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 461
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
Query 462 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 420
Query 522 AAACAAGCTGTGGAAGACATTAAAAGAAGAAGAGAAGAAGCACAGCGACTTCTAAAGGAT 581
|||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAACGACTTCTAAAGGAT 480
Query 582 GCTTACCTCACTTTAGATGG 601
|||| | ||||||| |||||
Sbjct 481 GCTTTCGTCACTTTGGATGG 500
> Ahg905426 jgi|Araly1|905426|Al_scaffold_0003_2554
Length=462
Score = 630 bits (341), Expect = 3e-180
Identities = 386/408 (95%), Gaps = 1/408 (0%)
Strand=Plus/Plus
Query 194 TCCGATTGAAGGCACCTACGTCTGTTTTGGAGGCAACTATACTACTGAAGATGTTCTTCC 253
||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 52 TCC-ATTGAAGGCACCTACGTTTGTTTCGGAGGCAACTATACTACGGAGGATGTTCTTCC 110
Query 254 AAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATCTTGATTACAA 313
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 111 GAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATGTTGATTACAA 170
Query 314 GAATGAACTCAGGTCACTGAATAGAGAACTACAGTTACATATATTGGAGCTTGCTGATGT 373
||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 GAAGGAACTCAGGTCGTTGAATAGAGAACTACAGTTACATATACTGGAGCTTGCTGATGT 230
Query 374 TCTTGTTGACAGACCTTCTCAATATGCGAAGAGGATTGGTGAAATTTCTTCTATCTTCAA 433
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 231 TCTTGTTGATAGACCTTCTCAATATGCAAAGAGGATTGGTGAAATTTCTTCAATCTTCAA 290
Query 434 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 350
Query 494 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCTGTGGAAGACATTAAAAGAAGAAG 553
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 351 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCCGTGGAAGACATTAAGAGGAGAAG 410
Query 554 AGAAGAAGCACAGCGACTTCTAAAGGATGCTTACCTCACTTTAGATGG 601
|||||||||||| ||||||||||||||||||| | || |||| |||||
Sbjct 411 AGAAGAAGCACAACGACTTCTAAAGGATGCTTTCGTCGCTTTGGATGG 458
> Ahg939730 jgi|Araly1|939730|scaffold_600274.1
Length=223
Score = 228 bits (123), Expect = 5e-59
Identities = 137/144 (95%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 93 TAGGGAATAATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAG 152
||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 12 TAGAGAATAATGACTATAGCTACGTATCCGCCTCCTCCACCGTATTACAGACTCTACAAG 71
Query 153 GATTACTCAGAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTAC 212
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 72 GATTACTCAGAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTAC 131
Query 213 GTCTGTTTTGGAGGCAACTATACT 236
|| ||||| |||||||||||||||
Sbjct 132 GTTTGTTTCGGAGGCAACTATACT 155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5