BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03230.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939701 jgi|Araly1|939701|scaffold_600245.1 771 0.0
> Ahg939701 jgi|Araly1|939701|scaffold_600245.1
Length=552
Score = 771 bits (417), Expect = 0.0
Identities = 506/548 (92%), Gaps = 10/548 (2%)
Strand=Plus/Plus
Query 105 ACGCTCTGTTTTTCATCAATGGCGTCAAGGAAGCttttttttGTCAAACCTAAATATATC 164
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 6 ACGCTCTG-TTTTCATCAATGGCGTCAAGGAAGCTTTTTTTTGTCAAGCCTAAATACATA 64
Query 165 TATCCAGAACCAAAACCAGAGATGTCCGATGAGAATGTCTTTGAATTCGACGAATCTGAT 224
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TATCCAGAACCAGAACCAGAGATGTCCGATGAGAATGTCTTTGAATTCGACGAATCTGAT 124
Query 225 ATTCATAACTTAGGCGATCATCAATTGCCGAATTCATTCGACGCGAAAAGATCGATATCA 284
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 125 ATTCATAACTTAGGCGATCATCAATTGCCGAATTCATTCGACGCTAAGAGATCGATATCT 184
Query 285 ATCTCTCGGTTACGGAGAAAACCGACGAAAACCGGAGATT-C--AGG---T---AACCGG 335
|||||||| ||| ||||||||||| ||||||||||||||| | || | ||||||
Sbjct 185 ATCTCTCGATTAAGGAGAAAACCGGCGAAAACCGGAGATTCCGTCGGTTCTGGAAACCGG 244
Query 336 GAGATTACAAAGACCGGTTCGCTTCCGGTTAATATCCCCGATTGGTCTAAGATCTTGAAG 395
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 245 GAAATCACAAAGACCGGTTCGCTTCCGGTTAATATCCCCGACTGGTCTAAGATCTTGAAG 304
Query 396 AGTGAGTATAGAGGTCATGCGATACCTGACGATGACAGTGACGACGATGACGAGGATGAT 455
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 305 AGTGAGTATAGAGGTCATGCGATACCTGACGACGACAGTGATGATGATGACGAGGAAGAT 364
Query 456 GACGATAGCAACGACGGTGGGAGACGGATGATTCCGCCGCACGAGTATTTGGCAAGACGG 515
||||||| |||||||||||| |||||||| |||||||||||||||||||| || | |||
Sbjct 365 GACGATATCAACGACGGTGGAAGACGGATCATTCCGCCGCACGAGTATTTAGCGCGGCGG 424
Query 516 AGAGGATCGTCGTTCACGGTGCACGAAGGAATCGGTGGGACGGCGAAAGGAAGAGATCTA 575
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 425 AGAGGATCGTCGTTCACGGTGCATGAAGGAATCGGTGGAACGGCGAAAGGAAGAGATCTA 484
Query 576 AGGCGATTGAGGAACGCGATTTGGGAGAAGATTGGGTTTCAGGATTAGTAATATAATAAG 635
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 485 AGGCGATTGAGGAATGCTATTTGGGAGAAGATTGGGTTTCAAGATTAATAATATATTAAG 544
Query 636 TATGTAAT 643
||||||||
Sbjct 545 TATGTAAT 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5