BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03260.1
Length=1937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487097 jgi|Araly1|487097|fgenesh2_kg.6__231__AT5G03260.1 3118 0.0
> Ahg487097 jgi|Araly1|487097|fgenesh2_kg.6__231__AT5G03260.1
Length=1925
Score = 3118 bits (1688), Expect = 0.0
Identities = 1848/1927 (96%), Gaps = 3/1927 (0%)
Strand=Plus/Plus
Query 4 ACATTTTGTATAACCAAAAGCAGTAGAAGATTAAGTACAAATAAAATCTCATCATTGCAT 63
||| |||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||
Sbjct 1 ACAATTTGTATAACCAAAAGGAATAGAACATTAAGTACAAATCAAATCTCATCATTGCAT 60
Query 64 CAAACCGGAAAATTGAACCGGAGATGAAGATGGGTTTTCTCTTTCTATTCTGTTATCTTC 123
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 CAAACCGGAAAATTGAACCGGAGATGAAGATGGCTTTTCTCTTTCTATTCTTTTATCTTC 120
Query 124 TTGCGTTTCTTGGCTATTCTCCGGTGGATGCGGCGGTGAAGAAGTACCAATTCGATGTTC 183
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTGCGTTTCTTGGCGATTCTCCGGTGGATGCGACGGTGAAGAAGTACCAATTCGATGTTC 180
Query 184 AAGTGAAGAACATAAGCCGGATATGCAATGCTAAACCGATTGTCACGGTTAATGGAATGT 243
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 181 AAGTGAAGAACATAAGCCGGATATGCAATGCTAAACCAATTGTCACGGTTAACGGAATGT 240
Query 244 TCCCTGGACCGACGGTTTACGCAAGAGAAGGTGATCGAGTCATCATCAACGTAACCAACC 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCCTGGACCGACGGTTTACGCAAGAGAAGGTGATCGAGTCATCATCAACGTAACCAACC 300
Query 304 ATGTACAATACAACATGTCCATCCATTGGCATGGGCTTAAACAGTACCGGAACGGTTGGG 363
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGTACAATACAACATGTCCATTCATTGGCATGGGCTTAAACAGTACCGGAACGGTTGGG 360
Query 364 CAGATGGTCCAGCATACATAACTCAGTGTCCGATCCAAACAGGACAGAGTTACCTTTATG 423
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 CGGATGGTCCAGCATACATAACCCAGTGTCCGATCCAAACAGGACAGAGTTACCTTTATG 420
Query 424 ATTTCAATGTGACCGGACAACGCGGGACCCTCTGGTGGCACGCACACATCCTCTGGCTAC 483
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 421 ATTTCAATGTGACCGGACAACGAGGGACCCTCTGGTGGCACGCGCACATCCTCTGGCTAC 480
Query 484 GAGCCACCGTCTACGGAGCTATTGTTATCTTGCCTGCACCGGGAAAACCGTATCCGTTCC 543
|||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||
Sbjct 481 GAGCCACCGTCTACGGAGCTATAGTCATCTTGCCTGAAGCGGGAAAACCGTATCCGTTCC 540
Query 544 CACAGCCATACCAAGAATCTAACATAATCCTCGGAGAATGGTGGAACAAAGACGTTGAGA 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CACAACCATACCAAGAATCTAACATAATCCTCGGAGAATGGTGGAACAAAGACGTTGAGA 600
Query 604 CTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCGATGTCGGATGCTCATACCA 663
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 CTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCAATGTCGGATGCTCATACCA 660
Query 664 TTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAACACACGTTCGTC-ATAGAG 722
|||||||||||||||||||||| ||||| |||||||||||||||||||| | | ||||||
Sbjct 661 TTAACGGAAAACCTGGACCGCTGTTTCCGTGTTCCGAGAAACACACGTTTG-CTATAGAG 719
Query 723 GCCGAAGCGGGTAAAACATATCTTCTAAGGATTATCAACGCAGCTTTAAACGACGAGCTA 782
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 720 GCCGAAGCGGGTAAAACATACCTTCTGAGGATTATCAACGCAGCATTAAACGACGAGCTA 779
Query 783 TTCTTCGGGATTGCGGGACACAACATGACCGTGGTGGAAATCGATGCGGTCTACACTAAA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCTTCGGGATTGCGGGACACAACATGACCGTGGTGGAAATCGATGCGGTCTACACTAAA 839
Query 843 CCATTCACAACCAAAGCCATTTTACTCGGACCAGGTCAAACCACTAATGTTTTAGTCAAA 902
|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 840 CCGTTCACAACCAAAGCCATTTTAATCGGACCAGGTCAAACCACTAATGTTCTAGTCAAA 899
Query 903 ACCGACCGGTCACCAAACCGCTACTTCATGGCAGCTAGTCCGTTTATGGACGCTCCTGTA 962
|||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 900 ACCGACCGCTCACCAAACCGCTACTACATGGCAGCTAGTCCGTTCATGGACGCTCCAGTA 959
Query 963 TCCGTAGACAACAAAACAGTAACCGCTATTCTTCAATACAAAGGCGTACCAAACACGGTC 1022
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 TCCGTAGACAACAAAACCGTAACCGCGATTCTTCAATACAAAGGCGTACCAAACACGGTC 1019
Query 1023 TTACCAATCCTACCAAAGCTTCCTTTGCCTAACGACACATCATTTGCTTTGGACTATAAC 1082
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTACCAATCTTACCCAAGCTTCCTTTGCCTAACGACACATCATTTGCTTTGGACTATAAC 1079
Query 1083 GGAAAGCTCAAGAGCCTCAACACACCGAATTTTCCGGCTCTTGTTCCTTTAAAAGTCGAC 1142
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1080 GGAAAGCTCAAGAGCCTCAACACACCAAATTTTCCGGCTCTTGTTCCATTAAAAGTCGAC 1139
Query 1143 AGGCGATTGTTCTACACGATCGGGCTAGGCATTAACGCGTGCCCGACTTGTGTTAACGGG 1202
||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1140 CGGCGACTGTTCTACACTATCGGGCTAGGCATTAACGCTTGCCCGACTTGTGTGAACGGG 1199
Query 1203 ACAAATCTCGCAGCTTCTATAAACAATATCACATTCATTATGCCCAAAACTGCACTCTTG 1262
|||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1200 ACAAATCTTGCAGCTTCTATAAACAATATCACATTCGTTATGCCCAAAACCGCGCTCTTG 1259
Query 1263 AAAGCACATTACTCCAACATCTCAGGTGTTTTCAGGACTGATTTCCCAGACCGACCACCC 1322
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1260 AAAGCACATTACTCCAACATCTCGGGTGTTTTCAGGACTGATTTCCCAGACAGACCCCCC 1319
Query 1323 AAAGCGTTTAACTACACCGGTGTGCCGCTCACGGCTAACCTTGGAACATCAACGGGGACA 1382
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1320 AAAGCGTTTAACTACACAGGTGTGCCGCTCACGGCTAACCTCGGAACATCTACGGGGACA 1379
Query 1383 AGACTTAGCCGAGTTAAGTTCAATACTACAATTGAGCTCGTCTTGCAAGACACCAATCTC 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGACTTAGCCGAGTTAAGTTCAATACTACAATTGAGCTCGTCTTGCAAGACACCAATCTC 1439
Query 1443 CTAACCGTTGAGTCACACCCTTTCCATCTTCATGGCTACAACTTCTTTGTCGTTGGAACC 1502
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1440 CTAACCGTTGAGTCACACCCATTCCATCTTCATGGCTACAACTTCTTTGTAGTTGGCACG 1499
Query 1503 GGTGTTGGAAACTTTGATCCCAAGAAAGATCCTGCTAAGTTCAATCTCGTTGACCCGCCT 1562
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1500 GGTGTTGGAAACTTTGATCCCAAGAAAGATCCGGCTAAGTTCAACCTCATTGACCCGCCT 1559
Query 1563 GAGAGAAACACCGTTGGAGTACCTACCGGTGGTTGGGCTGCCATCAGATTCAGGGCTGAT 1622
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 GAGAGAAACACAGTTGGAGTACCCACCGGTGGTTGGGCTGCCATCAGATTCAGGGCTGAT 1619
Query 1623 AATCCAGGTGTTTGGTTTATGCACTGTCACTTGGAAGTCCATACAATGTGGGGTTTGAAG 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AATCCAGGTGTTTGGTTTATGCACTGTCACTTGGAAGTCCATACAATGTGGGGTTTGAAG 1679
Query 1683 ATGGCTTTCGTCGTCGAGAACGGGGAAACACCTGAGCTTTCCGTTCTACCACCGCCTAAA 1742
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1680 ATGGCTTTCGTCGTCGAGAACGGGAAAACACCTGAGCTTTCGGTTCTACCACCGCCTAAA 1739
Query 1743 GACTATCCGTCCTGTTAAGAATCTGAGATGGGAACACTACTCTGATTCTTCGTCTTTATT 1802
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1740 GACTATCCGTCCTGTTAAGAATCTGAGATCGGAACACTACTCTGATTCTTCGTCGT-ATT 1798
Query 1803 TGTTAAGTTTCGCTGATGATATTCTTTGTTGATTGTATTTCCCTTCTGTTGATTTGTGTC 1862
||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1799 TGTAAAGTTTCGCTGATGATATTCTTTATTGCTTGTATTTCCCTTCTGTTGATTTGTGTC 1858
Query 1863 TGAGATTGTTTCCTATGGGGCTGCATAACATAATACACCCCGAAATTGCATAAGAAATGA 1922
|||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1859 TGAGATTGTTTCCTGTGGGGCTGCACAATACAATACACCCCGAAATTGCATAAGAAATGA 1918
Query 1923 AATTAAT 1929
|||||||
Sbjct 1919 AATTAAT 1925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790458195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5